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PDBsum entry 1c9r
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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 1c9r calculated with MOLE 2.0 PDB id
1c9r
Pores calculated on whole structure Pores calculated excluding ligands
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25 pores, coloured by radius 25 pores, coloured by radius 25 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.19 1.19 29.7 0.25 -0.06 4.8 84 0 2 1 5 2 0 0  A 801 T T 802 T
2 1.18 1.31 30.5 0.04 0.00 6.0 88 0 2 2 2 2 1 0  
3 1.55 1.54 48.1 -1.65 -0.67 18.7 86 2 1 0 1 0 0 0  T 828 P T 829 P C 830 P G 832 P G 833 P C 834 P A
801 T T 802 T G 803 T G 804 T C 805 T G 806 T C
808 T C 809 T G 810 T A 811 T A 812 T
4 1.41 1.40 58.2 -0.93 -0.42 18.0 81 7 4 1 5 1 1 0  C 830 P G 831 P G 832 P A 801 T T 802 T G 803 T G
804 T C 805 T
5 1.40 1.40 66.3 -0.98 -0.33 19.6 83 4 3 1 6 1 1 0  T 828 P T 829 P C 830 P G 832 P G 804 T C 805 T G
806 T C 808 T C 809 T G 810 T A 811 T A 812 T
6 1.36 1.38 67.7 -0.82 -0.31 10.1 90 3 1 8 3 1 1 0  
7 1.41 1.41 68.2 -1.17 -0.48 21.1 80 7 7 1 5 1 1 0  T 829 P C 830 P G 804 T C 805 T A 814 T G 815 T G
816 T G 817 T A 818 T C 819 T
8 1.22 1.22 76.6 -1.53 -0.37 16.8 80 3 3 3 5 2 1 0  T 828 P T 829 P C 830 P G 832 P A 838 P A 801 T T
802 T G 803 T G 804 T C 805 T G 806 T C 808 T C
809 T G 810 T A 811 T A 812 T
9 1.23 1.23 78.6 -1.57 -0.51 19.0 78 6 7 3 4 2 1 0  T 829 P C 830 P A 838 P A 801 T T 802 T G 803 T G
804 T C 805 T A 814 T G 815 T G 816 T G 817 T A
818 T C 819 T
10 2.59 2.75 80.6 -1.96 -0.69 26.4 81 6 5 0 2 0 0 0  T 828 P T 829 P C 830 P G 832 P G 806 T C 808 T C
809 T G 810 T A 811 T A 812 T G 815 T G 816 T G
817 T A 818 T C 819 T
11 1.22 2.42 107.9 -0.81 -0.09 19.6 84 10 5 6 10 3 1 0  
12 1.70 3.33 112.2 -1.67 -0.42 21.9 77 11 8 1 5 5 2 0  T 829 P C 830 P G 806 T G 815 T G 816 T G 817 T A
818 T C 819 T
13 1.19 1.69 118.1 -1.30 -0.40 17.8 79 9 8 5 9 5 1 0  T 829 P C 830 P A 838 P A 801 T T 802 T G 803 T G
804 T C 805 T
14 1.39 3.60 122.1 -1.51 -0.40 10.9 87 4 4 10 8 6 0 0  C 825 P T 826 P G 827 P G 816 T G 817 T A 818 T C
819 T
15 1.46 1.50 130.9 -1.45 -0.39 18.6 78 11 5 2 4 5 2 0  T 829 P C 830 P G 832 P G 833 P C 834 P A 801 T T
802 T G 803 T G 804 T C 805 T G 806 T
16 1.40 1.40 141.4 -1.18 -0.29 18.8 80 12 7 3 9 6 3 0  T 829 P C 830 P G 804 T C 805 T G 806 T
17 1.77 3.16 150.7 -1.63 -0.38 21.4 80 10 5 2 5 5 2 0  T 828 P T 829 P C 830 P G 832 P G 806 T C 808 T C
809 T G 810 T A 811 T A 812 T
18 1.38 1.39 151.8 -1.41 -0.31 17.7 78 11 7 5 8 7 3 0  T 829 P C 830 P A 838 P A 801 T T 802 T G 803 T G
804 T C 805 T G 806 T
19 1.29 2.39 156.9 -1.89 -0.39 25.7 78 12 9 2 6 6 1 0  T 828 P T 829 P C 830 P G 832 P G 806 T C 808 T C
809 T G 810 T A 811 T A 812 T
20 1.14 2.53 155.8 -1.67 -0.35 20.4 80 12 8 9 6 4 4 0  
21 1.16 2.27 170.1 -1.72 -0.42 21.8 80 11 12 9 6 6 5 0  
22 1.10 2.35 173.8 -1.23 -0.25 18.0 81 12 8 8 8 6 3 0  
23 1.17 2.28 177.5 -1.49 -0.38 19.0 82 11 10 10 6 6 3 0  
24 1.29 2.33 285.8 -1.58 -0.35 19.1 79 16 15 13 10 10 5 0  T 829 P C 830 P A 838 P A 801 T T 802 T G 803 T G
804 T C 805 T G 806 T
25 1.06 2.15 291.2 -1.19 -0.37 16.5 79 16 14 13 11 10 4 0  T 829 P C 830 P G 832 P G 833 P C 834 P A 801 T T
802 T G 803 T G 804 T C 805 T G 806 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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