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PDBsum entry 1c5d
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Tunnel analysis for: 1c5d calculated with  MOLE 2.0
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PDB id
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1c5d
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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7 tunnels,
coloured by tunnel radius |
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7 tunnels,
coloured by
tunnel radius
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7 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.20 |
1.38 |
24.0 |
-1.23 |
0.11 |
10.3 |
68 |
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2 |
1 |
2 |
3 |
5 |
0 |
0 |
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2 |
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1.17 |
1.36 |
39.5 |
-0.32 |
0.05 |
9.0 |
80 |
2 |
0 |
6 |
7 |
4 |
0 |
0 |
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3 |
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2.17 |
2.17 |
21.0 |
-1.33 |
-0.58 |
10.9 |
80 |
1 |
2 |
0 |
0 |
0 |
3 |
0 |
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4 |
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1.36 |
1.49 |
31.5 |
-0.76 |
-0.39 |
7.3 |
76 |
1 |
1 |
0 |
2 |
0 |
5 |
0 |
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5 |
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2.11 |
2.11 |
33.7 |
-1.62 |
-0.58 |
12.8 |
81 |
3 |
1 |
3 |
1 |
1 |
3 |
0 |
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6 |
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1.40 |
3.21 |
17.6 |
-0.81 |
-0.41 |
13.3 |
91 |
1 |
0 |
3 |
2 |
0 |
0 |
0 |
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7 |
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1.29 |
2.06 |
18.4 |
-1.83 |
-0.65 |
15.0 |
94 |
1 |
0 |
3 |
1 |
0 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program