PDBsum entry 1bml

Pore analysis for: 1bml calculated with

MOLE 2.0

PDB id

1bml

Pores calculated on whole structure

Pores calculated excluding ligands

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15 pores, coloured by radius

15 pores, coloured by radius

15 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.01

2.50

26.1

0.53

0.11

5.2

91

2

1

3

3

1

1

0

2

2.96

3.15

32.5

-0.39

-0.46

6.7

83

2

2

2

6

2

1

0

3

2.26

2.26

32.9

-1.37

-0.65

11.7

79

2

1

3

2

2

2

0

4

2.25

2.48

37.1

-0.35

0.02

10.6

86

4

1

3

4

2

2

0

5

1.20

1.37

39.5

-1.25

-0.48

14.7

78

3

3

2

3

2

2

0

6

2.26

2.30

69.7

-1.37

-0.45

21.3

76

4

6

4

4

4

1

0

7

2.19

2.36

72.4

-1.34

-0.54

15.0

80

5

4

5

8

3

1

0

8

1.37

1.37

76.8

-1.40

-0.39

20.2

79

5

6

4

6

3

1

0

9

1.21

1.40

77.5

-1.41

-0.36

18.9

76

6

5

3

5

4

1

0

10

1.21

1.34

80.5

-1.24

-0.52

11.8

84

3

3

5

7

2

3

0

11

2.19

2.37

86.9

-1.31

-0.47

16.9

80

6

6

5

8

3

0

0

12

1.72

1.72

95.8

-1.49

-0.56

19.8

81

8

7

4

5

3

0

0

13

1.19

1.34

98.4

-1.42

-0.44

18.6

78

7

7

5

7

3

2

0

14

2.19

2.22

112.9

-1.70

-0.52

22.7

77

9

9

5

6

3

1

0

15

2.22

2.47

121.4

-1.50

-0.50

19.0

79

8

7

5

7

4

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.