PDBsum entry 1bml Go to PDB code:  Tunnel analysis for: 1bml calculated with MOLE 2.0 PDB id 1bml Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.15 2.58 16.4 2.18 0.65 4.6 75 1 0 0 6 2 0 0   2 1.31 2.99 19.9 2.90 1.03 1.9 78 1 0 1 8 1 0 0   3 1.17 2.04 15.7 0.76 0.25 7.6 82 3 0 0 2 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.