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PDBsum entry 5i8h
Go to PDB code:
Ligand/metal interactions
PDB id
5i8h
2 instances of ligand highlighted
NAG-NAG-BMA-MAN-
MAN-MAN-MAN-MAN-
MAN-MAN
Ligands
NAG-NAG-BMA-MAN-
MAN-MAN-MAN
×2
NAG 1(M) to MAN 7(M)
NAG-NAG-BMA-MAN-
MAN
×2
NAG 1(N) to MAN 5(N)
NAG-NAG
×14
NAG 1(O) to NAG 2(O)
NAG 1(P) to NAG 2(P)
NAG 1(Q) to NAG 2(Q)
NAG 1(T) to NAG 2(T)
NAG 1(V) to NAG 2(V)
NAG 1(W) to NAG 2(W)
NAG 1(X) to NAG 2(X)
NAG 1(f) to NAG 2(f)
NAG-NAG-BMA-MAN-
MAN-MAN
×2
NAG 1(R) to MAN 6(R)
NAG-NAG-BMA
×4
NAG 1(S) to BMA 3(S)
NAG 1(Y) to BMA 3(Y)
NAG 1(k) to BMA 3(k)
NAG-NAG-BMA-MAN-
MAN-MAN-MAN-MAN-
MAN-MAN
×2
NAG 1(U) to MAN 10(U)
NAG-NAG-BMA-MAN
NAG 1(m) to MAN 4(m)
NAG
×16
NAG 908(A)
NAG 926(A)
NAG 942(A)
NAG 952(A)
NAG 901(B)
NAG 902(B)
NAG 903(B)
NAG 909(C)
NAG 305(I)
Ligand
NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(U)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(U)
15
15
1
0
Complete
Chiral checks - OK
BMA 3(U)
12
12
1
0
Complete
Chiral checks - OK
MAN 4(U)
12
12
1
0
Complete
Chiral checks - OK
MAN 5(U)
12
12
1
0
Complete
Chiral checks - OK
MAN 6(U)
12
12
1
0
Complete
Chiral checks - OK
MAN 7(U)
12
12
1
0
Complete
Chiral checks - OK
MAN 8(U)
12
12
1
0
Complete
Chiral checks - OK
MAN 9(U)
12
12
1
0
Complete
Chiral checks - OK
MAN 10(U)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN
List of
interactions
NAG 1(U) to MAN 10(U)
(also representing equivalent ligand NAG 1(h) to MAN 10(h) )
