PDBsum entry 5i8h

Pore analysis for: 5i8h calculated with

MOLE 2.0

PDB id

5i8h

Pores calculated on whole structure

Pores calculated excluding ligands

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18 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.57

1.77

28.7

-0.27

-0.10

5.9

89

1

2

4

4

1

1

0

NAG 1 e

2

1.42

1.68

39.8

-0.45

-0.30

9.0

83

1

2

4

4

2

1

0

NAG 2 e BMA 3 e MAN 4 e MAN 5 e MAN 6 e

3

1.58

1.91

55.7

-0.82

-0.36

10.9

90

3

2

6

6

6

1

0

NAG 909 C NAG 1 h NAG 2 h NAG 1 j NAG 2 j NAG 1 k
NAG 2 k

4

2.34

2.54

76.8

-1.40

-0.47

13.0

83

5

2

9

3

3

5

0

NAG 305 I

5

1.67

3.26

191.6

-1.58

-0.61

16.7

88

12

7

17

7

2

6

0

NAG 305 I

6

1.47

1.43

224.0

-1.70

-0.57

17.0

86

9

11

19

8

1

4

0

NAG 1 Z NAG 2 Z

7

1.52

3.10

224.7

-1.86

-0.55

22.0

85

9

13

15

9

1

1

0

NAG 927 C NAG 902 D NAG 1 Z NAG 2 Z NAG 1 c NAG 2
c

8

1.44

1.43

253.0

-1.90

-0.63

16.9

87

11

11

20

7

1

4

0

NAG 1 Z NAG 2 Z

9

1.44

2.42

148.9

-1.54

-0.35

22.2

83

8

9

12

6

3

1

1

10

1.34

2.31

204.1

-1.49

-0.33

20.1

81

12

10

11

11

4

1

0

NAG 952 A NAG 2 P NAG 1 V NAG 2 V NAG 1 W NAG 2 W
NAG 1 X NAG 2 X

11

2.54

2.57

68.6

-1.53

-0.57

13.9

84

6

3

8

4

1

5

0

NAG 301 K

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.