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PDBsum entry 3vi4
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Ligand/metal interactions
PDB id
3vi4
11 instances of ligand highlighted
NAG
Ligands
ARG-GLY-ASP-ASN
ARG 5001(G) to ASN 5004(G)
ARG-GLY-ASP
ARG 5001(I) to ASP 5003(I)
NAG-NAG
×2
NAG 1(J) to NAG 2(J)
NAG 1(M) to NAG 2(M)
NAG-NAG-BMA-MAN-
MAN-MAN
×2
NAG 1(K) to MAN 6(K)
NAG
×11
NAG 2005(A)
NAG 2006(A)
NAG 2007(A)
NAG 2016(A)
NAG 503(B)
NAG 504(B)
NAG 2009(C)
Metals
_CA
×10
CA 2001(A)
CA 2002(A)
CA 2003(A)
CA 2004(A)
CA 501(B)
_MG
×2
MG 502(B)
Ligand
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
[N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-
Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-
Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 2016(A)
15
15
1
1
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG
List of
interactions
NAG 2016(A)
(also representing equivalent ligand NAG 2016(C) )
_CA
×10
_MG
×2
