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PDBsum entry 5erd
Go to PDB code:
Ligand/metal interactions
PDB id
5erd
3 instances of ligand highlighted
NAG-NAG
Ligands
NAG-NAG-BMA
×3
NAG 1(C) to BMA 3(C)
NAG 1(D) to BMA 3(D)
NAG-NAG-BMA-FUC
NAG 1(E) to FUC 4(E)
NAG-NAG
×3
NAG 1(F) to NAG 2(F)
NAG 1(H) to NAG 2(H)
NAG 1(I) to NAG 2(I)
NAG
×3
NAG 601(A)
NAG 608(A)
MAN
×6
MAN 613(A)
MAN 614(A)
MAN 615(A)
EDO
EDO 627(A)
Metals
_CA
×22
CA 924(B)
CA 616(A)
CA 617(A)
CA 618(A)
CA 619(A)
CA 620(A)
CA 621(A)
CA 624(A)
CA 625(A)
CA 918(B)
CA 919(B)
Ligand
NAG-NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
[N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-
Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-
Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(H)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(H)
15
15
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG
List of
interactions
NAG 1(H) to NAG 2(H)
_CA
×22
