 |
PDBsum entry 5erd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 5erd calculated with  MOLE 2.0
|
PDB id
|
|
|
|
5erd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
5 tunnels,
coloured by tunnel radius |
|
6 tunnels,
coloured by
tunnel radius
|
6 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.12 |
3.01 |
20.8 |
2.12 |
0.53 |
3.2 |
84 |
|
0 |
1 |
0 |
6 |
2 |
0 |
0 |
|
|
 |
|
2 |
 |
1.18 |
3.31 |
23.1 |
3.13 |
1.35 |
2.9 |
87 |
1 |
1 |
0 |
9 |
1 |
0 |
0 |
|
|
3 |
 |
1.32 |
1.35 |
16.0 |
0.52 |
-0.13 |
7.6 |
92 |
1 |
1 |
1 |
4 |
0 |
1 |
0 |
|
|
4 |
 |
1.20 |
2.49 |
19.0 |
2.43 |
0.69 |
1.0 |
79 |
0 |
0 |
1 |
7 |
2 |
0 |
0 |
|
|
5 |
 |
1.66 |
2.85 |
18.8 |
-1.71 |
-0.28 |
30.9 |
87 |
3 |
1 |
1 |
1 |
0 |
0 |
0 |
|
 |
6 |
 |
1.24 |
1.45 |
15.9 |
1.88 |
0.59 |
4.1 |
84 |
1 |
1 |
2 |
5 |
1 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program