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PDBsum entry 5i8h
Go to PDB code:
Ligand/metal interactions
PDB id
5i8h
14 instances of ligand highlighted
NAG-NAG
Ligands
NAG-NAG-BMA-MAN-
MAN-MAN-MAN
×2
NAG 1(M) to MAN 7(M)
NAG-NAG-BMA-MAN-
MAN
×2
NAG 1(N) to MAN 5(N)
NAG-NAG
×14
NAG 1(O) to NAG 2(O)
NAG 1(P) to NAG 2(P)
NAG 1(Q) to NAG 2(Q)
NAG 1(T) to NAG 2(T)
NAG 1(V) to NAG 2(V)
NAG 1(W) to NAG 2(W)
NAG 1(X) to NAG 2(X)
NAG 1(f) to NAG 2(f)
NAG-NAG-BMA-MAN-
MAN-MAN
×2
NAG 1(R) to MAN 6(R)
NAG-NAG-BMA
×4
NAG 1(S) to BMA 3(S)
NAG 1(Y) to BMA 3(Y)
NAG 1(k) to BMA 3(k)
NAG-NAG-BMA-MAN-
MAN-MAN-MAN-MAN-
MAN-MAN
×2
NAG 1(U) to MAN 10(U)
NAG-NAG-BMA-MAN
NAG 1(m) to MAN 4(m)
NAG
×16
NAG 908(A)
NAG 926(A)
NAG 942(A)
NAG 952(A)
NAG 901(B)
NAG 902(B)
NAG 903(B)
NAG 909(C)
NAG 305(I)
Ligand
NAG-NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
[N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-
Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-
Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(O)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(O)
15
15
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG
List of
interactions
NAG 1(O) to NAG 2(O)
(also representing equivalent ligand NAG 1(b) to NAG 2(b) )
