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PDBsum entry 3ryc
Go to PDB code:
Ligand/metal interactions
PDB id
3ryc
Ligand highlighted
GDP
Ligands
GTP
×3
GTP 600(A)
GTP 600(D)
SO4
×11
SO4 452(A)
SO4 453(A)
SO4 454(A)
SO4 455(A)
SO4 456(B)
SO4 457(B)
SO4 453(C)
SO4 457(D)
SO4 146(E)
GDP
GDP 600(B)
Metals
_MG
×3
MG 601(A)
MG 601(D)
Ligand
GDP
-
Guanosine-5'-Diphosphate
Formula:
C
10
H
15
N
5
O
11
P
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GDP 600(B)
28
28
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
GDP 600(B)
O3B: O1B
|
O1B: O2B
|
O2A: O1A
|
O1A: O2A
4
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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LIGPLOT
of interactions involving ligand GDP
List of
interactions
GDP 600(B)
_MG
×3
