PDBsum entry 3ryc

Pore analysis for: 3ryc calculated with

MOLE 2.0

PDB id

3ryc

Pores calculated on whole structure

Pores calculated excluding ligands

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14 pores, coloured by radius

15 pores, coloured by radius

15 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.83

1.83

29.3

-2.57

-0.82

27.5

85

3

6

5

0

1

1

0

2

1.66

2.01

30.7

-2.21

-0.69

25.7

81

4

3

2

0

1

0

0

3

1.55

2.12

30.8

-2.54

-0.81

26.2

87

1

5

5

0

1

1

0

4

1.80

2.15

36.6

-0.62

-0.23

8.1

87

1

3

6

3

2

1

0

5

2.62

2.75

39.0

-2.43

-0.60

23.3

82

4

1

3

1

0

2

0

SO4 456 B

6

2.21

3.27

40.1

-1.47

-0.47

15.1

85

3

3

3

2

0

2

0

7

2.19

2.20

46.0

-0.70

-0.42

11.7

84

2

2

3

4

0

3

0

SO4 455 A

8

2.01

2.10

50.6

-1.47

-0.61

12.1

86

3

3

4

2

0

2

0

SO4 455 A

9

1.61

1.62

55.6

-1.14

-0.39

16.7

84

3

4

7

3

3

0

0

10

1.29

1.94

63.2

-1.08

-0.17

12.6

83

5

2

6

5

3

2

0

SO4 456 B

11

2.21

3.35

112.7

-1.84

-0.55

15.3

81

5

4

6

2

1

4

0

12

2.21

2.28

124.6

-1.37

-0.53

11.4

81

4

4

7

4

1

5

0

SO4 455 A

13

1.73

2.32

26.6

-2.36

-0.21

35.6

83

7

6

2

4

1

0

0

14

2.38

2.38

27.0

-0.96

-0.54

8.8

84

1

2

3

3

0

2

0

15

1.62

2.12

47.3

-2.43

-0.47

35.9

79

9

8

0

4

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.