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PDBsum entry 3m5h
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Ligand/metal interactions
PDB id
3m5h
Ligand highlighted
GAL-SIA
Ligands
NAG-GAL-SIA
×2
NAG 1(G) to SIA 3(G)
NAG-NAG
×2
NAG 1(H) to NAG 2(H)
NAG 1(J) to NAG 2(J)
GAL-SIA
GAL 1(I) to SIA 2(I)
NAG
×4
NAG 331(A)
NAG 183(D)
NAG 183(F)
GOL
×4
GOL 185(B)
GOL 186(B)
Ligand
GAL-SIA
GAL
-
Beta-D-Galactopyranose [Beta-D-Galactose; d-Galactose; galactose]
Formula:
C
6
H
12
O
6
SIA
-
N-Acetyl-Alpha-Neuraminic acid [N-Acetylneuraminic acid; sialic acid; alpha-Sialic acid; o-Sialic acid]
Formula:
C
11
H
9
NO
9
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GAL 1(I)
12
11
0
0
1
0
-
-
-
-
SIA 2(I)
21
21
1
0
0
0
0
0
0
0
Advanced Analysis
Residue
Name Mismatches
Count
GAL 1(I)
-
0
SIA 2(I)
O1B: O1A
|
O1A: O1B
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand GAL-SIA
List of
interactions
GAL 1(I) to SIA 2(I)
