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PDBsum entry 5dn2
Go to PDB code:
Ligand/metal interactions
PDB id
5dn2
Ligand highlighted
CYS-ARG-CYS-ASP-
LYS-PRO-ARG-ARG
Ligands
LYS-PRO-ARG-ARG
×2
LYS 229(F) to ARG 232(F)
CYS-ARG-CYS-ASP-
LYS-PRO-ARG-ARG
CYS 225(E) to ARG 232(E)
DIO
×2
DIO 501(B)
DIO 501(D)
GOL
GOL 502(B)
Ligand
CYS-ARG-CYS-ASP-LYS-PRO-ARG-ARG
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
CYS 225(E)
7
7
1
1
Complete
Chiral checks - OK
ARG 226(E)
12
12
1
1
Complete
Chiral checks - OK
CYS 227(E)
7
7
1
1
Complete
Chiral checks - OK
ASP 228(E)
9
9
1
1
Complete
Chiral checks - OK
LYS 229(E)
10
10
1
1
Complete
Chiral checks - OK
PRO 230(E)
8
8
1
1
Complete
Chiral checks - OK
ARG 231(E)
12
12
1
1
Complete
Chiral checks - OK
ARG 232(E)
12
12
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
CYS 225(E)
-
0
ARG 226(E)
-
0
CYS 227(E)
-
0
ASP 228(E)
O: OXT
1
LYS 229(E)
-
0
PRO 230(E)
-
0
ARG 231(E)
-
0
ARG 232(E)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
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of interactions involving ligand CYS-ARG-CYS-ASP-LYS-PRO-ARG-ARG
List of
interactions
CYS 225(E) to ARG 232(E)
