PDBsum entry 5c1d

Ligand/metal interactions

PDB id

5c1d


	Ligand highlighted
	12V

Ligands

VAL-THR-PRO-VAL-
SER-THR-ALA-ALA

VAL 1(C) to ALA 8(C)

12V

12V 1101(A)

PO4 ×2

PO4 1102(A)

PO4 1103(A)

Ligand 12V - (2s,3r,4r,5s,6r)-3-(Acetylamino)-4,5-Dihydroxy-6-
(Hydroxymethyl)tetrahydro-2h-Thiopyran-2-
Yl [(2r,3s, 4r,5r)-5-(2,4-Dioxo-3,4-Dihydropyrimidin-1(2h)-
Yl)-3, 4-Dihydroxytetrahydrofuran-2-
Yl]methyl dihydrogen diphosphate
[Uridine diphospho-5-Thio-N-Acetylglucosamine]
Formula: C₁₇H₂₇N₃O₁₆P₂S

Validation of ligand annotation

Per Residue Validation

	Atoms				Missing		Incorrect Chiral Centres
Residue	Dic.	Struc.	Link	Subs.	Atoms	Rings	Planar	High	C	Other
12V 1101(A)	39	39	0	0	Complete		Chiral checks - OK

Additional Information

Validation carried out using MotiveValidator. Full validation report can be found in Validator^DB.

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Ligand matches this enzyme's product UDP with similarity 64.10%

LIGPLOT of interactions involving ligand 12V

List of
interactions

12V 1101(A)