PDBsum entry 5c1d Go to PDB code:  Tunnel analysis for: 5c1d calculated with MOLE 2.0 PDB id 5c1d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.33 1.32 45.4 -0.76 -0.30 13.2 83 3 2 3 3 3 2 0  12V 1101 A 2 1.33 1.33 47.6 -0.49 -0.28 8.8 83 4 1 3 4 3 4 0  12V 1101 A 3 1.56 1.74 16.7 -1.45 -0.13 16.3 70 3 0 1 2 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.