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PDBsum entry 4rpy
Go to PDB code:
Ligand/metal interactions
PDB id
4rpy
Ligand highlighted
PPV-DCP
Ligands
ACT
×2
ACT 412(A)
ACT 103(T)
PPV-DCP
PPV 413(A) to DCP 414(A)
DCP
DCP 101(T)
Metals
_NA
×7
NA 101(D)
NA 403(A)
NA 404(A)
NA 405(A)
NA 406(A)
NA 407(A)
NA 102(T)
_MG
×3
MG 101(P)
MG 401(A)
MG 402(A)
_CL
×4
CL 408(A)
CL 409(A)
CL 410(A)
CL 411(A)
Ligand
PPV-DCP
PPV
-
Pyrophosphate
Formula:
H
4
O
7
P
2
DCP
-
2'-Deoxycytidine-5'-Triphosphate
Formula:
C
9
H
16
N
3
O
13
P
3
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
PPV 413(A)
9
9
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
PPV 413(A)
O31: O21
|
O21: O31
|
O12: O22
|
O22: O32
4
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Het Group PPV corresponds to this enzyme's product diphosphate
LIGPLOT
of interactions involving ligand PPV-DCP
List of
interactions
PPV 413(A) to DCP 414(A)
_NA
×7
_MG
×3
