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PDBsum entry 2ppb
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Ligand/metal interactions
PDB id
2ppb
2 instances of ligand highlighted
APC
Ligands
STD
×2
STD 7001(D)
APC
×2
APC 5999(D)
Metals
_MG
×4
MG 9004(N)
MG 9003(N)
_ZN
×4
ZN 7058(D)
ZN 8112(D)
Ligand
APC
-
Diphosphomethylphosphonic acid adenosyl ester
[Alpha,Beta-Methyleneadenosine-5'-Triphosphate]
Formula:
C
11
H
18
N
5
O
12
P
3
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
APC 5999(D)
31
31
0
0
0
0
0
2
0
0
Advanced Analysis
Residue
Name Mismatches
Count
APC 5999(D)
O3G: O1G
|
O1G: O3G
|
O2B: O1B
|
O1B: O2B
|
O2A: O1A...
6
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand APC
List of
interactions
APC 5999(D)
(also representing equivalent ligand APC 6999(M) )
_MG
×4
_ZN
×4
