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PDBsum entry 2ppb
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Tunnel analysis for: 2ppb calculated with  MOLE 2.0
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PDB id
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2ppb
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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3 tunnels,
coloured by tunnel radius |
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5 tunnels,
coloured by
tunnel radius
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5 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.19 |
1.69 |
153.1 |
-0.73 |
-0.05 |
18.0 |
81 |
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14 |
13 |
7 |
18 |
6 |
3 |
0 |
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2 |
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1.19 |
1.71 |
162.6 |
-0.76 |
-0.11 |
17.6 |
79 |
14 |
6 |
5 |
14 |
2 |
5 |
0 |
STD 7001 D DT 8 G DG 9 G DG 10 G DC 11 G DG 12 G
DT 13 G DC 17 G DG 18 G DC 19 G DG 20 G DC 21 G G
7 H C 8 H C 11 H DC 4 I DG 5 I DC 6 I
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3 |
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1.20 |
1.59 |
164.6 |
-1.01 |
-0.15 |
16.9 |
82 |
19 |
6 |
11 |
15 |
2 |
5 |
0 |
APC 5999 D MG 9002 D DT 14 G DC 15 G DG 16 G DC
17 G DG 18 G DC 19 G DG 20 G DC 21 G G 7 H C 8 H
C 11 H C 13 H G 14 H C 15 H G 16 H
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4 |
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1.33 |
1.42 |
15.7 |
-0.16 |
-0.13 |
13.4 |
85 |
1 |
1 |
1 |
5 |
1 |
0 |
0 |
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5 |
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1.32 |
1.40 |
19.0 |
-0.01 |
-0.33 |
8.4 |
76 |
2 |
1 |
0 |
4 |
1 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program