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PDBsum entry 5e9d
Go to PDB code:
Ligand/metal interactions
PDB id
5e9d
2 instances of ligand highlighted
GLU-LEU-ALA-GLY-
ILE-GLY-ILE-LEU-
THR-VAL
Ligands
GLU-LEU-ALA-GLY-
ILE-GLY-ILE-LEU-
THR-VAL
×2
GLU 1(C) to VAL 10(C)
Ligand
GLU-LEU-ALA-GLY-ILE-GLY-ILE-LEU-THR-VAL
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GLU 1(C)
10
10
1
1
0
0
0
0
0
0
LEU 2(C)
9
9
1
1
0
0
0
0
0
0
ALA 3(C)
6
-
-
-
-
-
-
-
-
-
GLY 4(C)
5
-
-
-
-
-
-
-
-
-
ILE 5(C)
9
9
1
1
0
0
0
0
0
0
GLY 6(C)
5
-
-
-
-
-
-
-
-
-
ILE 7(C)
9
9
1
1
0
0
0
0
0
0
LEU 8(C)
9
9
1
1
0
0
0
0
0
0
THR 9(C)
8
8
1
1
0
0
0
0
0
0
VAL 10(C)
8
7
0
0
1
0
-
-
-
-
Advanced Analysis
Residue
Name Mismatches
Count
GLU 1(C)
O: OXT
1
LEU 2(C)
O: OXT
1
ALA 3(C)
-
0
GLY 4(C)
-
0
ILE 5(C)
O: OXT
1
GLY 6(C)
-
0
ILE 7(C)
-
0
LEU 8(C)
O: OXT
1
THR 9(C)
-
0
VAL 10(C)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand GLU-LEU-ALA-GLY-ILE-GLY-ILE-LEU-THR-VAL
List of
interactions
GLU 1(C) to VAL 10(C)
(also representing equivalent ligand GLU 1(H) to VAL 10(H) )
