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PDBsum entry 5dn2
Go to PDB code:
Ligand/metal interactions
PDB id
5dn2
2 instances of ligand highlighted
LYS-PRO-ARG-ARG
Ligands
LYS-PRO-ARG-ARG
×2
LYS 229(F) to ARG 232(F)
CYS-ARG-CYS-ASP-
LYS-PRO-ARG-ARG
CYS 225(E) to ARG 232(E)
DIO
×2
DIO 501(B)
DIO 501(D)
GOL
GOL 502(B)
Ligand
LYS-PRO-ARG-ARG
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
LYS 229(F)
10
6
1
1
4
0
-
-
-
-
PRO 230(F)
8
8
1
1
0
0
0
0
0
0
ARG 231(F)
12
12
1
1
0
0
0
0
0
0
ARG 232(F)
12
12
0
0
0
0
0
0
0
0
Advanced Analysis
Residue
Name Mismatches
Count
LYS 229(F)
O: OXT
1
PRO 230(F)
-
0
ARG 231(F)
-
0
ARG 232(F)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
MotiveValidator
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Validator
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3D Viewers:
LIGPLOT
of interactions involving ligand LYS-PRO-ARG-ARG
List of
interactions
LYS 229(F) to ARG 232(F)
(also representing equivalent ligand LYS 229(G) to ARG 232(G) )
