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PDBsum entry 4oxd
Go to PDB code:
Ligand/metal interactions
PDB id
4oxd
Ligand highlighted
ALA-ZGL-LYS-DSG
Ligands
ALA-ZGL-LYS-DSG
ALA 2(H) to DSG 5(H)
LYS
LYS 307(B)
MUB
MUB 101(H)
Metals
_MG
MG 304(A)
_CL
×2
CL 305(C)
CL 303(D)
_ZN
×18
ZN 303(E)
ZN 301(A)
ZN 302(A)
ZN 303(A)
ZN 302(B)
ZN 301(C)
ZN 302(C)
ZN 303(C)
ZN 302(D)
ZN 301(E)
ZN 302(E)
Ligand
ALA-ZGL-LYS-DSG
ZGL
-
D-Alpha-Glutamine [Iso-D-Glutamine]
Formula:
C
5
H
10
N
2
O
3
DSG
-
D-Asparagine
Formula:
C
4
H
8
N
2
O
3
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
MUB 1(H)
20
20
1
1
0
0
1
0
1
0
ALA 2(H)
6
-
-
-
-
-
-
-
-
-
ZGL 3(H)
10
10
1
1
0
0
0
0
0
0
LYS 4(H)
10
10
0
0
0
0
0
0
0
0
DSG 5(H)
9
9
1
1
0
0
0
0
0
0
Advanced Analysis
Residue
Name Mismatches
Count
MUB 1(H)
-
0
ALA 2(H)
-
0
ZGL 3(H)
OE2: OE1
1
LYS 4(H)
OXT: O
|
O: OXT
2
DSG 5(H)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand ALA-ZGL-LYS-DSG
List of
interactions
ALA 2(H) to DSG 5(H)
_MG
_ZN
×18
