 |
PDBsum entry 4oxd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 4oxd calculated with  MOLE 2.0
|
PDB id
|
|
|
|
4oxd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
6 pores,
coloured by radius |
|
5 pores,
coloured by radius
|
5 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.02 |
2.28 |
84.8 |
-2.08 |
-0.58 |
22.5 |
79 |
|
5 |
8 |
6 |
1 |
5 |
1 |
0 |
|
MG 304 A ZN 306 B
|
 |
|
2 |
 |
1.36 |
3.01 |
103.6 |
-1.33 |
-0.38 |
23.9 |
78 |
7 |
11 |
1 |
9 |
3 |
0 |
0 |
ZGL 3 H MUB 101 H
|
|
3 |
 |
1.87 |
2.07 |
112.7 |
-1.65 |
-0.34 |
20.1 |
78 |
9 |
12 |
7 |
5 |
8 |
1 |
0 |
MUB 101 H
|
|
4 |
 |
1.38 |
3.00 |
126.2 |
-1.78 |
-0.39 |
22.7 |
77 |
8 |
13 |
3 |
8 |
5 |
1 |
0 |
MUB 101 H
|
 |
5 |
 |
1.36 |
2.91 |
141.4 |
-1.40 |
-0.42 |
20.4 |
79 |
7 |
9 |
4 |
6 |
4 |
0 |
0 |
CL 303 D
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program