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PDBsum entry 4c2d
Go to PDB code:
Ligand/metal interactions
PDB id
4c2d
3 instances of ligand highlighted
ALA-ALA-SER-LEU-
SER-ALA
Ligands
ALA-ALA-SER-LEU-
SER-ALA
×3
ALA 1(E) to ALA 6(E)
SER-LEU-SER-ALA
SER 3(H) to ALA 6(H)
ALA-ALA-PRO-GLN-
ALA
ALA 1(M) to ALA 5(M)
PRO-GLN-THR-ALA
×2
PRO 2(N) to ALA 5(N)
PRO 2(O) to ALA 5(O)
GLN-THR-ALA
GLN 3(P) to ALA 5(P)
Ligand
ALA-ALA-SER-LEU-SER-ALA
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ALA 1(E)
6
-
-
-
-
-
-
-
-
-
ALA 2(E)
6
-
-
-
-
-
-
-
-
-
SER 3(E)
7
7
1
1
0
0
0
0
0
0
LEU 4(E)
9
9
1
1
0
0
0
0
0
0
SER 5(E)
7
6
0
0
1
0
-
-
-
-
ALA 6(E)
6
-
-
-
-
-
-
-
-
-
Advanced Analysis
Residue
Name Mismatches
Count
ALA 1(E)
-
0
ALA 2(E)
-
0
SER 3(E)
-
0
LEU 4(E)
O: OXT
1
SER 5(E)
CB: C
|
C: CB
|
O: OG
|
OG: OXT
4
ALA 6(E)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand ALA-ALA-SER-LEU-SER-ALA
List of
interactions
ALA 1(E) to ALA 6(E)
also representing 2 other equivalent ligands:
ALA 1(F) to ALA 6(F)
ALA 1(G) to ALA 6(G)
