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PDBsum entry 3vi4
Go to PDB code:
Ligand/metal interactions
PDB id
3vi4
Ligand highlighted
ARG-GLY-ASP-ASN
Ligands
ARG-GLY-ASP-ASN
ARG 5001(G) to ASN 5004(G)
ARG-GLY-ASP
ARG 5001(I) to ASP 5003(I)
NAG-NAG
×2
NAG 1(J) to NAG 2(J)
NAG 1(M) to NAG 2(M)
NAG-NAG-BMA-MAN-
MAN-MAN
×2
NAG 1(K) to MAN 6(K)
NAG
×11
NAG 2005(A)
NAG 2006(A)
NAG 2007(A)
NAG 2016(A)
NAG 503(B)
NAG 504(B)
NAG 2009(C)
Metals
_CA
×10
CA 2001(A)
CA 2002(A)
CA 2003(A)
CA 2004(A)
CA 501(B)
_MG
×2
MG 502(B)
Ligand
ARG-GLY-ASP-ASN
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ARG 5001(G)
12
12
1
1
0
0
0
0
0
0
GLY 5002(G)
5
-
-
-
-
-
-
-
-
-
ASP 5003(G)
9
9
1
1
0
0
0
0
0
0
ASN 5004(G)
9
8
0
0
1
0
-
-
-
-
Advanced Analysis
Residue
Name Mismatches
Count
ARG 5001(G)
-
0
GLY 5002(G)
-
0
ASP 5003(G)
O: OXT
1
ASN 5004(G)
O: OXT
1
Additional Information
Validation carried out using
MotiveValidator
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Validator
DB
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3D Viewers:
LIGPLOT
of interactions involving ligand ARG-GLY-ASP-ASN
List of
interactions
ARG 5001(G) to ASN 5004(G)
_CA
×10
_MG
×2
