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PDBsum entry 3o4l
Go to PDB code:
Ligand/metal interactions
PDB id
3o4l
Ligand highlighted
GLY-LEU-CYS-THR-
LEU-VAL-ALA-MET-
LEU
Ligands
GLY-LEU-CYS-THR-
LEU-VAL-ALA-MET-
LEU
GLY 1(C) to LEU 9(C)
GOL
×11
GOL 277(A)
GOL 278(A)
GOL 279(A)
GOL 101(B)
GOL 6(D)
GOL 202(D)
GOL 1(E)
GOL 247(E)
GOL 248(E)
GOL 249(E)
GOL 250(E)
SO4
×7
SO4 280(A)
SO4 281(A)
SO4 102(B)
SO4 103(B)
SO4 251(E)
SO4 252(E)
SO4 253(E)
MES
MES 100(B)
Ligand
GLY-LEU-CYS-THR-LEU-VAL-ALA-MET-LEU
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GLY 1(C)
5
-
-
-
Residue too small to validate
LEU 2(C)
9
9
1
1
Complete
Chiral checks - OK
CYS 3(C)
7
7
1
1
Complete
Chiral checks - OK
THR 4(C)
8
8
1
1
Complete
Chiral checks - OK
LEU 5(C)
9
9
1
1
Complete
Chiral checks - OK
VAL 6(C)
8
8
1
1
Complete
Chiral checks - OK
ALA 7(C)
6
-
-
-
Residue too small to validate
MET 8(C)
9
9
1
1
Complete
Chiral checks - OK
LEU 9(C)
9
9
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
GLY 1(C)
-
0
LEU 2(C)
O: OXT
1
CYS 3(C)
-
0
THR 4(C)
-
0
LEU 5(C)
-
0
VAL 6(C)
-
0
ALA 7(C)
-
0
MET 8(C)
O: OXT
1
LEU 9(C)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
MotiveValidator
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Validator
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3D Viewers:
LIGPLOT
of interactions involving ligand GLY-LEU-CYS-THR-LEU-VAL-ALA-MET-LEU
List of
interactions
GLY 1(C) to LEU 9(C)
