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PDBsum entry 3d2u
Go to PDB code:
Ligand/metal interactions
PDB id
3d2u
2 instances of ligand highlighted
ALA-LEU-PRO-HIS-
ALA-ILE-LEU-ARG-
LEU
Ligands
ALA-LEU-PRO-HIS-
ALA-ILE-LEU-ARG-
LEU
×2
ALA 1(G) to LEU 9(G)
NAG-NAG
×3
NAG 810(A) to NAG 811(A)
NAG 831(A) to NAG 832(A)
MAN
MAN 812(A)
BMA
BMA 813(A)
FUC
FUC 814(A)
NAG
×7
NAG 861(A)
NAG 871(A)
NAG 891(A)
NAG 810(E)
Ligand
ALA-LEU-PRO-HIS-ALA-ILE-LEU-ARG-LEU
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ALA 1(G)
6
-
-
-
Residue too small to validate
LEU 2(G)
9
9
1
1
Complete
Chiral checks - OK
PRO 3(G)
8
8
1
1
Complete
Chiral checks - OK
HIS 4(G)
11
11
1
1
Complete
Chiral checks - OK
ALA 5(G)
6
-
-
-
Residue too small to validate
ILE 6(G)
9
9
1
1
Complete
Chiral checks - OK
LEU 7(G)
9
9
1
1
Complete
Chiral checks - OK
ARG 8(G)
12
12
1
1
Complete
Chiral checks - OK
LEU 9(G)
9
9
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
ALA 1(G)
-
0
LEU 2(G)
O: OXT
1
PRO 3(G)
-
0
HIS 4(G)
-
0
ALA 5(G)
-
0
ILE 6(G)
-
0
LEU 7(G)
O: OXT
1
ARG 8(G)
O: OXT
1
LEU 9(G)
-
0
Additional Information
Validation carried out using
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3D Viewers:
LIGPLOT
of interactions involving ligand ALA-LEU-PRO-HIS-ALA-ILE-LEU-ARG-LEU
List of
interactions
ALA 1(G) to LEU 9(G)
(also representing equivalent ligand ALA 1(C) to LEU 9(C) )
