PDBsum entry 3d2u Go to PDB code:  Pore analysis for: 3d2u calculated with MOLE 2.0 PDB id 3d2u Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   14 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.66 4.08 32.4 -2.28 -0.58 26.8 79 5 4 2 1 1 2 0   2 1.78 1.99 33.8 -1.89 -0.55 26.2 86 4 5 2 4 1 0 0   3 1.86 1.95 37.6 -2.37 -0.64 29.2 84 7 5 3 1 1 1 0   4 1.39 1.56 59.2 -2.29 -0.48 29.6 80 7 7 4 1 3 1 0   5 1.68 2.39 73.5 -1.52 -0.30 16.2 78 7 5 7 4 4 3 0  NAG 831 E NAG 832 E 6 1.65 2.19 78.3 -1.30 -0.15 18.6 80 4 5 4 5 4 1 0  NAG 831 E NAG 832 E 7 1.40 1.59 91.1 -1.57 -0.20 20.1 75 9 6 6 3 6 3 0  NAG 831 E NAG 832 E Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.