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PDBsum entry 2ybe
Go to PDB code:
Ligand/metal interactions
PDB id
2ybe
Ligand highlighted
LA8-ALF-3PG
Ligands
LA8-ALF-3PG
LA8 1419(A) to 3PG 1421(A)
Metals
_MG
MG 1417(A)
_CL
CL 1418(A)
Ligand
LA8-ALF-3PG
LA8
-
L-Adenosine-5'-Diphosphate [L-Adp]
Formula:
C
10
H
15
N
5
O
10
P
2
ALF
-
Tetrafluoroaluminate ion
Formula:
AlF
4
3PG
-
3-Phosphoglyceric acid
Formula:
C
3
H
7
O
7
P
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
LA8 1419(A)
27
27
0
0
Complete
Chiral checks - OK
ALF 1420(A)
5
-
-
-
Residue too small to validate
3PG 1421(A)
11
11
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
LA8 1419(A)
O3B: O2B
|
O2B: O3B
2
ALF 1420(A)
-
0
3PG 1421(A)
O3P: O2P
|
O2P: O4P
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Het Group LA8 corresponds to this enzyme's product ADP
LIGPLOT
of interactions involving ligand LA8-ALF-3PG
List of
interactions
LA8 1419(A) to 3PG 1421(A)
_MG
