PDBsum entry 2ybe Go to PDB code:  Tunnel analysis for: 2ybe calculated with MOLE 2.0 PDB id 2ybe Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.70 1.89 17.8 1.07 0.02 2.1 67 0 0 0 5 3 1 0  LA8 1419 A 2 1.72 1.91 33.5 -0.08 -0.02 8.2 72 1 3 1 3 5 1 0  LA8 1419 A 3 1.66 1.85 42.9 -0.46 -0.39 12.9 75 2 2 0 3 4 2 0  LA8 1419 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.