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PDBsum entry 2id5
Go to PDB code:
Ligand/metal interactions
PDB id
2id5
9 instances of ligand highlighted
NAG-NAG-MAN
Ligands
NAG-NAG-MAN
×9
NAG 1(E) to MAN 3(E)
NAG 1(F) to MAN 3(F)
NAG 1(H) to MAN 3(H)
NAG-NAG
×2
NAG 1(G) to NAG 2(G)
NAG 1(P) to NAG 2(P)
NAG-NAG-MAN-MAN
×2
NAG 1(I) to MAN 4(I)
NAG 1(O) to MAN 4(O)
NAG
×13
NAG 501(A)
NAG 502(A)
NAG 503(A)
NAG 501(B)
NAG 503(B)
NAG 503(C)
NAG 501(D)
Ligand
NAG-NAG-MAN
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(E)
15
15
1
1
0
0
0
0
0
0
NAG 2(E)
15
15
1
0
0
0
0
0
0
0
MAN 3(E)
12
12
1
0
0
0
0
0
1
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-MAN
List of
interactions
NAG 1(E) to MAN 3(E)
(also representing equivalent ligand NAG 1(L) to MAN 3(L) )
