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PDBsum entry 1oge
Go to PDB code:
Ligand/metal interactions
PDB id
1oge
5 instances of ligand highlighted
RP5
Ligands
RP5
×5
RP5 1133(A)
Metals
_CL
×2
CL 1132(A)
Ligand
RP5
-
5-O-Phosphono-Beta-D-Ribofuranose
[[(2r,3s,4s,5r)-3,4,5-Trihydroxytetrahydrofuran-2-
Yl]methyl dihydrogen phosphate; 5-O-Phosphono-Beta-D-
Ribose; 5-O-Phosphono-D-Ribose; 5-O-Phosphono-Ribose]
Formula:
C
5
H
11
O
8
P
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
RP5 1133(A)
14
14
0
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's reactant beta-D-ribopyranose with similarity 71.43%
LIGPLOT
of interactions involving ligand RP5
List of
interactions
RP5 1133(A)
also representing 4 other equivalent ligands:
RP5 1132(B)
RP5 1132(C)
RP5 1133(D)
RP5 1132(E)
_CL
×2
