PDBsum entry 1oge Go to PDB code:  Tunnel analysis for: 1oge calculated with MOLE 2.0 PDB id 1oge Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.30 1.55 17.2 -0.60 -0.13 14.4 79 2 2 0 4 0 2 0   2 1.25 1.51 19.0 -1.44 -0.31 21.1 78 4 3 0 4 0 2 0   3 1.15 1.15 24.5 0.14 -0.25 9.6 79 2 0 0 5 0 0 0   4 1.24 1.58 31.0 0.12 -0.31 8.9 80 3 1 0 5 0 0 0   5 1.14 1.82 15.3 0.72 0.42 11.3 82 2 1 0 6 1 0 0   6 1.14 1.89 16.7 0.89 0.61 11.4 78 2 1 0 5 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.