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PDBsum entry 1ldp
Go to PDB code:
Ligand/metal interactions
PDB id
1ldp
Ligand highlighted
ALA-PRO-ALA-ALA-
ALA-ALA-ALA-ALA-
MET
Ligands
ALA-PRO-ALA-ALA-
ALA-ALA-ALA-ALA-
MET
ALA 1(P) to MET 9(P)
GLN-LEU-SER-PRO-
PHE-PRO-PHE-ASP-
LEU
GLN 1(Q) to LEU 9(Q)
NAG-NDG
NAG 1(A) to NDG 2(A)
NAG
NAG 273(H)
Ligand
ALA-PRO-ALA-ALA-ALA-ALA-ALA-ALA-MET
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ALA 1(P)
6
-
-
-
Residue too small to validate
PRO 2(P)
8
8
1
1
Complete
Chiral checks - OK
ALA 3(P)
6
-
-
-
Residue too small to validate
ALA 4(P)
6
-
-
-
Residue too small to validate
ALA 5(P)
6
-
-
-
Residue too small to validate
ALA 6(P)
6
-
-
-
Residue too small to validate
ALA 7(P)
6
-
-
-
Residue too small to validate
ALA 8(P)
6
-
-
-
Residue too small to validate
MET 9(P)
9
9
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
ALA 1(P)
-
0
PRO 2(P)
-
0
ALA 3(P)
-
0
ALA 4(P)
-
0
ALA 5(P)
-
0
ALA 6(P)
-
0
ALA 7(P)
-
0
ALA 8(P)
-
0
MET 9(P)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
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3D Viewers:
LIGPLOT
of interactions involving ligand ALA-PRO-ALA-ALA-ALA-ALA-ALA-ALA-MET
List of
interactions
ALA 1(P) to MET 9(P)
