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PDBsum entry 5adc

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protein ligands metals Protein-protein interface(s) links
Oxidoreductase PDB id
5adc

 

 

 

 

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Contents
Protein chains
408 a.a.
Ligands
HEM ×2
H4B ×2
TUE ×2
ACT ×2
Metals
_ZN
Waters ×251
PDB id:
5adc
Name: Oxidoreductase
Title: Structure of rat neuronal nitric oxide synthase heme domain in complex with 7-(((5-((methylamino)methyl)pyridin-3-yl)oxy)methyl) quinolin-2- amine
Structure: Nitric oxide synthase, brain. Chain: a, b. Fragment: heme domain, residues 297-718. Synonym: 1neuronal nitric oxide synthase, bnos, constitutive nos, nc- neuronal nos, n-nos, nnos, peptidyl-cysteine s-nitrosylase nos1. Engineered: yes
Source: Rattus norvegicus. Norway rat. Organism_taxid: 10116. Expressed in: escherichia coli. Expression_system_taxid: 469008.
Resolution:
2.10Å     R-factor:   0.202     R-free:   0.253
Authors: H.Li,T.L.Poulos
Key ref: M.A.Cinelli et al. (2015). Phenyl Ether- and Aniline-Containing 2-Aminoquinolines as Potent and Selective Inhibitors of Neuronal Nitric Oxide Synthase. J Med Chem, 58, 8694-8712. PubMed id: 26469213 DOI: 10.1021/acs.jmedchem.5b01330
Date:
20-Aug-15     Release date:   28-Oct-15    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
P29476  (NOS1_RAT) -  Nitric oxide synthase 1 from Rattus norvegicus
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1429 a.a.
408 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.1.14.13.39  - nitric-oxide synthase (NADPH).
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: 2 L-arginine + 3 NADPH + 4 O2 + H+ = 2 L-citrulline + 2 nitric oxide + 3 NADP+ + 4 H2O
2 × L-arginine
+ 3 × NADPH
+ 4 × O2
+ H(+)
= 2 × L-citrulline
+ 2 × nitric oxide
+ 3 × NADP(+)
+ 4 × H2O
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    reference    
 
 
DOI no: 10.1021/acs.jmedchem.5b01330 J Med Chem 58:8694-8712 (2015)
PubMed id: 26469213  
 
 
Phenyl Ether- and Aniline-Containing 2-Aminoquinolines as Potent and Selective Inhibitors of Neuronal Nitric Oxide Synthase.
M.A.Cinelli, H.Li, A.V.Pensa, S.Kang, L.J.Roman, P.Martásek, T.L.Poulos, R.B.Silverman.
 
  ABSTRACT  
 
Excess nitric oxide (NO) produced by neuronal nitric oxide synthase (nNOS) is implicated in neurodegenerative disorders. As a result, inhibition of nNOS and reduction of NO levels is desirable therapeutically, but many nNOS inhibitors are poorly bioavailable. Promising members of our previously reported 2-aminoquinoline class of nNOS inhibitors, although orally bioavailable and brain-penetrant, suffer from unfavorable off-target binding to other CNS receptors, and they resemble known promiscuous binders. Rearranged phenyl ether- and aniline-linked 2-aminoquinoline derivatives were therefore designed to (a) disrupt the promiscuous binding pharmacophore and diminish off-target interactions and (b) preserve potency, isoform selectivity, and cell permeability. A series of these compounds was synthesized and tested against purified nNOS, endothelial NOS (eNOS), and inducible NOS (iNOS) enzymes. One compound, 20, displayed high potency, selectivity, and good human nNOS inhibition, and retained some permeability in a Caco-2 assay. Most promisingly, CNS receptor counterscreening revealed that this rearranged scaffold significantly reduces off-target binding.
 

 

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