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PDBsum entry 1qqm

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protein ligands metals links
Hydrolase PDB id
1qqm

 

 

 

 

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Contents
Protein chain
378 a.a. *
Ligands
PO4
ADP
Metals
_MG
__K
_CL ×2
Waters ×440
* Residue conservation analysis
PDB id:
1qqm
Name: Hydrolase
Title: D199s mutant of bovine 70 kilodalton heat shock protein
Structure: D199s mutant of bovine 70 kilodalton heat shock protein. Chain: a. Fragment: hsc70 atpase fragment. Engineered: yes. Mutation: yes
Source: Bos taurus. Cattle. Organism_taxid: 9913. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Resolution:
1.90Å     R-factor:   0.193     R-free:   0.234
Authors: E.R.Johnson,D.B.Mckay
Key ref:
E.R.Johnson and D.B.McKay (1999). Mapping the role of active site residues for transducing an ATP-induced conformational change in the bovine 70-kDa heat shock cognate protein. Biochemistry, 38, 10823-10830. PubMed id: 10451379 DOI: 10.1021/bi990816g
Date:
07-Jun-99     Release date:   15-Sep-99    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P19120  (HSP7C_BOVIN) -  Heat shock cognate 71 kDa protein from Bos taurus
Seq:
Struc:
 
Seq:
Struc:
650 a.a.
378 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 6 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: E.C.3.6.4.10  - non-chaperonin molecular chaperone ATPase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: ATP + H2O = ADP + phosphate + H+
ATP
+ H2O
=
ADP
Bound ligand (Het Group name = ADP)
corresponds exactly
+ phosphate
+ H(+)
Bound ligand (Het Group name = PO4)
corresponds exactly
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    reference    
 
 
DOI no: 10.1021/bi990816g Biochemistry 38:10823-10830 (1999)
PubMed id: 10451379  
 
 
Mapping the role of active site residues for transducing an ATP-induced conformational change in the bovine 70-kDa heat shock cognate protein.
E.R.Johnson, D.B.McKay.
 
  ABSTRACT  
 
ATP binding induces a conformational change in 70-kDa heat shock proteins (Hsp70s) that facilitates release of bound polypeptides. Using the bovine heat shock cognate protein (Hsc70) as a representative of the Hsp70 family, we have characterized the effect of mutations on the coupling between ATP binding and the nucleotide-induced conformational change. Steady-state solution small-angle X-ray scattering and kinetic fluorescence measurements on a 60-kDa fragment of Hsc70 show that point mutations K71M, E175S, D199S, and D206S in the nucleotide binding cleft impair the ability of ATP to induce a conformational change. A secondary mutation in the peptide binding domain, E543K, "rescues" the ATP-induced transition for three of these mutations (E175S/E543K, D199S/E543K, and D206S/E543K) but not for K71M/E543K. Analysis of kinetics of the ATPase cycle confirm that these effects do not result from unexpectedly rapid ATP hydrolysis or slow ATP binding. Crystallographic structures of E175S, D199S, and D206S mutant ATPase fragment proteins show that the mutations do not perturb the tertiary structure of the protein but do significantly alter the protein-ligand interactions, due in part to an apparent charge compensation effect whereby mutating a (probably) negatively charged carboxyl group to a neutral serine displaces a K+ ion from the nucleotide binding cleft in two out of three cases (E175S and D199S but not D206S).
 

Literature references that cite this PDB file's key reference

  PubMed id Reference
23202586 C.Leidig, G.Bange, J.Kopp, S.Amlacher, A.Aravind, S.Wickles, G.Witte, E.Hurt, R.Beckmann, and I.Sinning (2013).
Structural characterization of a eukaryotic chaperone-the ribosome-associated complex.
  Nat Struct Mol Biol, 20, 23-28.
PDB codes: 4gmq 4gni
21482798 A.Zhuravleva, and L.M.Gierasch (2011).
Allosteric signal transmission in the nucleotide-binding domain of 70-kDa heat shock protein (Hsp70) molecular chaperones.
  Proc Natl Acad Sci U S A, 108, 6987-6992.  
20854710 W.Yang (2011).
Nucleases: diversity of structure, function and mechanism.
  Q Rev Biophys, 44, 1.  
20865007 R.G.Smock, O.Rivoire, W.P.Russ, J.F.Swain, S.Leibler, R.Ranganathan, and L.M.Gierasch (2010).
An interdomain sector mediating allostery in Hsp70 molecular chaperones.
  Mol Syst Biol, 6, 414.  
  19908379 Y.Liu, and I.Bahar (2010).
Toward understanding allosteric signaling mechanisms in the ATPase domain of molecular chaperones.
  Pac Symp Biocomput, (), 269-280.  
19883127 H.J.Woo, J.Jiang, E.M.Lafer, and R.Sousa (2009).
ATP-induced conformational changes in Hsp70: molecular dynamics and experimental validation of an in silico predicted conformation.
  Biochemistry, 48, 11470-11477.  
18585795 R.Perera, M.Khaliq, and R.J.Kuhn (2008).
Closing the door on flaviviruses: entry as a target for antiviral drug design.
  Antiviral Res, 80, 11-22.  
17996706 J.Jiang, E.G.Maes, A.B.Taylor, L.Wang, A.P.Hinck, E.M.Lafer, and R.Sousa (2007).
Structural basis of J cochaperone binding and regulation of Hsp70.
  Mol Cell, 28, 422-433.
PDB codes: 2qw9 2qwl 2qwm 2qwn 2qwo 2qwp 2qwq 2qwr
17923091 Q.Liu, and W.A.Hendrickson (2007).
Insights into Hsp70 chaperone activity from a crystal structure of the yeast Hsp110 Sse1.
  Cell, 131, 106-120.
PDB code: 2qxl
16905099 B.S.Hong, M.K.Yun, Y.M.Zhang, S.Chohnan, C.O.Rock, S.W.White, S.Jackowski, H.W.Park, and R.Leonardi (2006).
Prokaryotic type II and type III pantothenate kinases: The same monomer fold creates dimers with distinct catalytic properties.
  Structure, 14, 1251-1261.
PDB codes: 2ews 2f9t 2f9w
16455491 M.Vogel, B.Bukau, and M.P.Mayer (2006).
Allosteric regulation of Hsp70 chaperones by a proline switch.
  Mol Cell, 21, 359-367.  
17052976 M.Vogel, M.P.Mayer, and B.Bukau (2006).
Allosteric regulation of Hsp70 chaperones involves a conserved interdomain linker.
  J Biol Chem, 281, 38705-38711.  
16307916 J.Jiang, K.Prasad, E.M.Lafer, and R.Sousa (2005).
Structural basis of interdomain communication in the Hsc70 chaperone.
  Mol Cell, 20, 513-524.
PDB code: 1yuw
15802271 K.P.Kauppinen, F.Duan, J.I.Wels, and D.Manor (2005).
Regulation of the Dbl proto-oncogene by heat shock cognate protein 70 (Hsc70).
  J Biol Chem, 280, 21638-21644.  
15273304 J.M.Gruschus, L.E.Greene, E.Eisenberg, and J.A.Ferretti (2004).
Experimentally biased model structure of the Hsc70/auxilin complex: substrate transfer and interdomain structural change.
  Protein Sci, 13, 2029-2044.  
14984054 C.Harrison (2003).
GrpE, a nucleotide exchange factor for DnaK.
  Cell Stress Chaperones, 8, 218-224.  
11751892 B.A.Owen, W.P.Sullivan, S.J.Felts, and D.O.Toft (2002).
Regulation of heat shock protein 90 ATPase activity by sequences in the carboxyl terminus.
  J Biol Chem, 277, 7086-7091.  
  12482202 P.C.Angeletti, D.Walker, and A.T.Panganiban (2002).
Small glutamine-rich protein/viral protein U-binding protein is a novel cochaperone that affects heat shock protein 70 activity.
  Cell Stress Chaperones, 7, 258-268.  
11157986 S.L.Newmyer, and S.L.Schmid (2001).
Dominant-interfering Hsc70 mutants disrupt multiple stages of the clathrin-coated vesicle cycle in vivo.
  J Cell Biol, 152, 607-620.  
11544208 T.K.Barthel, J.Zhang, and G.C.Walker (2001).
ATPase-defective derivatives of Escherichia coli DnaK that behave differently with respect to ATP-induced conformational change and peptide release.
  J Bacteriol, 183, 5482-5490.  
  11147968 S.Kimmins, and T.H.MacRae (2000).
Maturation of steroid receptors: an example of functional cooperation among molecular chaperones and their associated proteins.
  Cell Stress Chaperones, 5, 76-86.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB codes are shown on the right.

 

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