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50 a.a.
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40 a.a.
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36 a.a.
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37 a.a.
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50 a.a.
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40 a.a.
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47 a.a.
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50 a.a.
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38 a.a.
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* Residue conservation analysis
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PDB id:
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| Name: |
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Viral protein
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Title:
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Human respiratory syncytial virus fusion protein core
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Structure:
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Fusion protein (f). Chain: a, c, e, g, i, k, m, o, q, s, u, w. Fragment: residues 153-209, hrsv f1 heptad repeat. Synonym: cell fusion glycoprotein. Engineered: yes. Other_details: first heptad repeat. Fusion protein (f). Chain: b, d, f, h, j, l, n, p, r, t, v, x. Fragment: residues 476-520, hrsv f1 heptad repeat.
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Source:
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Human respiratory syncytial virus. Organism_taxid: 11261. Strain: rss-2. Gene: hrsv f. Expressed in: escherichia coli. Expression_system_taxid: 562.
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Biol. unit:
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Hexamer (from
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Resolution:
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2.30Å
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R-factor:
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0.233
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R-free:
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0.286
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Authors:
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X.Zhao,M.Singh,V.N.Malashkevich,P.S.Kim
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Key ref:
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X.Zhao
et al.
(2000).
Structural characterization of the human respiratory syncytial virus fusion protein core.
Proc Natl Acad Sci U S A,
97,
14172-14177.
PubMed id:
DOI:
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Date:
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18-Oct-00
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Release date:
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03-Jan-01
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PROCHECK
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Headers
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References
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P11209
(FUS_HRSVR) -
Fusion glycoprotein F0 from Human respiratory syncytial virus A (strain RSS-2)
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Seq: Struc:
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574 a.a.
50 a.a.
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P11209
(FUS_HRSVR) -
Fusion glycoprotein F0 from Human respiratory syncytial virus A (strain RSS-2)
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Seq: Struc:
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574 a.a.
40 a.a.
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P11209
(FUS_HRSVR) -
Fusion glycoprotein F0 from Human respiratory syncytial virus A (strain RSS-2)
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Seq: Struc:
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574 a.a.
36 a.a.
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P11209
(FUS_HRSVR) -
Fusion glycoprotein F0 from Human respiratory syncytial virus A (strain RSS-2)
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Seq: Struc:
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574 a.a.
37 a.a.
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P11209
(FUS_HRSVR) -
Fusion glycoprotein F0 from Human respiratory syncytial virus A (strain RSS-2)
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Seq: Struc:
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574 a.a.
50 a.a.
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P11209
(FUS_HRSVR) -
Fusion glycoprotein F0 from Human respiratory syncytial virus A (strain RSS-2)
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Seq: Struc:
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574 a.a.
40 a.a.
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P11209
(FUS_HRSVR) -
Fusion glycoprotein F0 from Human respiratory syncytial virus A (strain RSS-2)
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Seq: Struc:
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574 a.a.
47 a.a.
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Enzyme class:
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Chains A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X:
E.C.?
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DOI no:
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Proc Natl Acad Sci U S A
97:14172-14177
(2000)
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PubMed id:
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Structural characterization of the human respiratory syncytial virus fusion protein core.
|
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X.Zhao,
M.Singh,
V.N.Malashkevich,
P.S.Kim.
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ABSTRACT
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Human respiratory syncytial virus (HRSV) is a major cause of a number of severe
respiratory diseases, including bronchiolitis and pneumonia, in infants and
young children. The HRSV F protein, a glycoprotein essential for viral entry, is
a primary target for vaccine and drug development. Two heptad-repeat regions
within the HRSV F sequence were predicted by the computer program learncoil-vmf.
These regions are thought to form trimer-of-hairpins-like structures, similar to
those found in the fusion proteins of several enveloped viruses. The hairpin
structure likely brings the viral and cellular membranes into close apposition,
thereby facilitating membrane fusion and subsequent viral entry. Here, we show
that peptides, denoted HR-N and HR-C, corresponding to the heptad-repeat regions
from the N-terminal and C-terminal segments of the HRSV F protein, respectively,
form a stable alpha-helical trimer of heterodimers. The HRSV N/C complex was
crystallized and its x-ray structure was determined at 2.3-A resolution. As
anticipated, the complex is a six-helix bundle in which the HR-N peptides form a
three-stranded, central coiled coil, and the HR-C peptides pack in an
antiparallel manner into hydrophobic grooves on the coiled-coil surface. There
is remarkable structural similarity between the HRSV N/C complex and the fusion
protein core of other viruses, including HIV-1 gp41. In addition, earlier work
has shown that HRSV HR-C peptides, like the HIV-1 gp41 C peptides, inhibit viral
infection. Thus, drug discovery and vaccine development strategies aimed at
inhibiting viral entry by blocking hairpin formation may be applied to the
inhibition of HRSV.
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Selected figure(s)
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Figure 1.
Fig. 1. Schematic diagram of the HRSV F protein sequence.
F1 and F2 are formed after proteolytic cleavage of the precursor
F0. The signal peptide (SP), the cleavage site (CS), the
putative fusion peptide (FP), the N-terminal HR (HR-N) region,
the C-terminal HR (HR-C) region, and the transmembrane segment
(TM) within the amino acid sequence of the recombinant recRSV-1
construct are indicated. The HR-N and HR-C regions predicted by
LEARNCOIL-VMF are represented by shaded boxes.
Protease-resistant fragments from trypsin (HRSV-N57 and
HRSV-C45) and proteinase K (HRSV-N51 and HRSV-C39) cleavage are
indicated.
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Figure 6.
Fig. 6. The cavity on the surface of the HRSV-N57 coiled
coil. (A) A stereo view of interactions in the HRSV-N57 cavity.
Two phenylalanine residues of HRSV-C45 (yellow) fit into the
cavity formed by two neighboring HRSV-N57 peptides (blue). A
prime symbol is used to distinguish residues from the two
HRSV-N57 chains. Figure was prepared with MOLSCRIPT (45). (B)
Comparison of cavity interactions of the HRSV and SV5
structures. The HRSV-N57 coiled coils, which superimpose closely
with the SV5 N peptide coiled coils (21), are represented as a
molecular surface (the most convex part shown in green and the
most concave in gray). The HRSV-C45 (yellow) and SV5 C peptide
(pink) helices are shown as ribbons with selected side chains
that pack into the cavity. The relative shift of the C peptides
is clearly visible. Figure was drawn with the program GRASP (46).
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Figures were
selected
by an automated process.
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Literature references that cite this PDB file's key reference
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PubMed id
|
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Reference
|
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|
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|
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A.S.Yunus,
T.P.Jackson,
K.Crisafi,
I.Burimski,
N.R.Kilgore,
D.Zoumplis,
G.P.Allaway,
C.T.Wild,
and
K.Salzwedel
(2010).
Elevated temperature triggers human respiratory syncytial virus F protein six-helix bundle formation.
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| |
Virology,
396,
226-237.
|
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|
|
|
|
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D.Roymans,
H.L.De Bondt,
E.Arnoult,
P.Geluykens,
T.Gevers,
M.Van Ginderen,
N.Verheyen,
H.Kim,
R.Willebrords,
J.F.Bonfanti,
W.Bruinzeel,
M.D.Cummings,
H.van Vlijmen,
and
K.Andries
(2010).
Binding of a potent small-molecule inhibitor of six-helix bundle formation requires interactions with both heptad-repeats of the RSV fusion protein.
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| |
Proc Natl Acad Sci U S A,
107,
308-313.
|
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PDB code:
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|
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E.C.Smith,
and
R.E.Dutch
(2010).
Side chain packing below the fusion peptide strongly modulates triggering of the Hendra virus F protein.
|
| |
J Virol,
84,
10928-10932.
|
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|
|
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|
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G.H.Bird,
N.Madani,
A.F.Perry,
A.M.Princiotto,
J.G.Supko,
X.He,
E.Gavathiotis,
J.G.Sodroski,
and
L.D.Walensky
(2010).
Hydrocarbon double-stapling remedies the proteolytic instability of a lengthy peptide therapeutic.
|
| |
Proc Natl Acad Sci U S A,
107,
14093-14098.
|
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|
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|
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K.Huang,
L.Incognito,
X.Cheng,
N.D.Ulbrandt,
and
H.Wu
(2010).
Respiratory syncytial virus-neutralizing monoclonal antibodies motavizumab and palivizumab inhibit fusion.
|
| |
J Virol,
84,
8132-8140.
|
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|
|
|
|
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K.M.Empey,
R.S.Peebles,
and
J.K.Kolls
(2010).
Pharmacologic advances in the treatment and prevention of respiratory syncytial virus.
|
| |
Clin Infect Dis,
50,
1258-1267.
|
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|
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|
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L.E.Luque,
O.A.Bridges,
J.N.Mason,
K.L.Boyd,
A.Portner,
and
C.J.Russell
(2010).
Residues in the heptad repeat a region of the fusion protein modulate the virulence of Sendai virus in mice.
|
| |
J Virol,
84,
810-821.
|
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|
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|
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M.Magro,
D.Andreu,
P.Gómez-Puertas,
J.A.Melero,
and
C.Palomo
(2010).
Neutralization of human respiratory syncytial virus infectivity by antibodies and low-molecular-weight compounds targeted against the fusion glycoprotein.
|
| |
J Virol,
84,
7970-7982.
|
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|
|
|
|
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D.Qiao,
B.H.Janke,
and
S.Elankumaran
(2009).
Molecular characterization of glycoprotein genes and phylogenetic analysis of two swine paramyxoviruses isolated from United States.
|
| |
Virus Genes,
39,
53-65.
|
 |
|
|
|
|
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Q.Huang,
T.Korte,
P.S.Rachakonda,
E.W.Knapp,
and
A.Herrmann
(2009).
Energetics of the loop-to-helix transition leading to the coiled-coil structure of influenza virus hemagglutinin HA2 subunits.
|
| |
Proteins,
74,
291-303.
|
 |
|
|
|
|
 |
R.D.Cardin,
F.J.Bravo,
A.P.Sewell,
J.Cummins,
L.Flamand,
J.M.Juteau,
D.I.Bernstein,
and
A.Vaillant
(2009).
Amphipathic DNA polymers exhibit antiviral activity against systemic Murine Cytomegalovirus infection.
|
| |
Virol J,
6,
214.
|
 |
|
|
|
|
 |
T.Paal,
M.A.Brindley,
C.St Clair,
A.Prussia,
D.Gaus,
S.A.Krumm,
J.P.Snyder,
and
R.K.Plemper
(2009).
Probing the spatial organization of measles virus fusion complexes.
|
| |
J Virol,
83,
10480-10493.
|
 |
|
|
|
|
 |
G.Long,
X.Pan,
and
J.M.Vlak
(2008).
Conserved leucines in N-terminal heptad repeat HR1 of envelope fusion protein F of group II nucleopolyhedroviruses are important for correct processing and essential for fusogenicity.
|
| |
J Virol,
82,
2437-2447.
|
 |
|
|
|
|
 |
J.Rawling,
B.García-Barreno,
and
J.A.Melero
(2008).
Insertion of the two cleavage sites of the respiratory syncytial virus fusion protein in Sendai virus fusion protein leads to enhanced cell-cell fusion and a decreased dependency on the HN attachment protein for activity.
|
| |
J Virol,
82,
5986-5998.
|
 |
|
|
|
|
 |
K.Ludwig,
B.Schade,
C.Böttcher,
T.Korte,
N.Ohlwein,
B.Baljinnyam,
M.Veit,
and
A.Herrmann
(2008).
Electron cryomicroscopy reveals different F1+F2 protein States in intact parainfluenza virions.
|
| |
J Virol,
82,
3775-3781.
|
 |
|
|
|
|
 |
N.D.Ulbrandt,
H.Ji,
N.K.Patel,
A.S.Barnes,
S.Wilson,
P.A.Kiener,
J.Suzich,
and
M.P.McCarthy
(2008).
Identification of antibody neutralization epitopes on the fusion protein of human metapneumovirus.
|
| |
J Gen Virol,
89,
3113-3118.
|
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|
|
|
|
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Z.N.Li,
B.J.Lee,
W.A.Langley,
K.C.Bradley,
R.J.Russell,
and
D.A.Steinhauer
(2008).
Length requirements for membrane fusion of influenza virus hemagglutinin peptide linkers to transmembrane or fusion peptide domains.
|
| |
J Virol,
82,
6337-6348.
|
 |
|
|
|
|
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D.R.Beniac,
S.L.Devarennes,
A.Andonov,
R.He,
and
T.F.Booth
(2007).
Conformational Reorganization of the SARS Coronavirus Spike Following Receptor Binding: Implications for Membrane Fusion.
|
| |
PLoS ONE,
2,
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|
 |
|
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|
|
 |
R.A.Lamb,
and
T.S.Jardetzky
(2007).
Structural basis of viral invasion: lessons from paramyxovirus F.
|
| |
Curr Opin Struct Biol,
17,
427-436.
|
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|
|
|
|
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R.L.Crim,
S.A.Audet,
S.A.Feldman,
H.S.Mostowski,
and
J.A.Beeler
(2007).
Identification of linear heparin-binding peptides derived from human respiratory syncytial virus fusion glycoprotein that inhibit infectivity.
|
| |
J Virol,
81,
261-271.
|
 |
|
|
|
|
 |
R.Marsh,
A.Connor,
E.Gias,
and
G.L.Toms
(2007).
Increased susceptibility of human respiratory syncytial virus to neutralization by anti-fusion protein antibodies on adaptation to replication in cell culture.
|
| |
J Med Virol,
79,
829-837.
|
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|
|
|
|
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S.A.Miller,
S.Tollefson,
J.E.Crowe,
J.V.Williams,
and
D.W.Wright
(2007).
Examination of a fusogenic hexameric core from human metapneumovirus and identification of a potent synthetic peptide inhibitor from the heptad repeat 1 region.
|
| |
J Virol,
81,
141-149.
|
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|
|
|
|
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S.Seth,
I.Skountzou,
K.M.Gernert,
and
R.W.Compans
(2007).
Fusogenic variants of a noncytopathic paramyxovirus.
|
| |
J Virol,
81,
4286-4297.
|
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|
|
|
|
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A.Vaillant,
J.M.Juteau,
H.Lu,
S.Liu,
C.Lackman-Smith,
R.Ptak,
and
S.Jiang
(2006).
Phosphorothioate oligonucleotides inhibit human immunodeficiency virus type 1 fusion by blocking gp41 core formation.
|
| |
Antimicrob Agents Chemother,
50,
1393-1401.
|
 |
|
|
|
|
 |
C.J.Russell,
and
L.E.Luque
(2006).
The structural basis of paramyxovirus invasion.
|
| |
Trends Microbiol,
14,
243-246.
|
 |
|
|
|
|
 |
J.Doyle,
A.Prussia,
L.K.White,
A.Sun,
D.C.Liotta,
J.P.Snyder,
R.W.Compans,
and
R.K.Plemper
(2006).
Two domains that control prefusion stability and transport competence of the measles virus fusion protein.
|
| |
J Virol,
80,
1524-1536.
|
 |
|
|
|
|
 |
K.S.Yeung,
G.A.Yamanaka,
and
N.A.Meanwell
(2006).
Severe acute respiratory syndrome coronavirus entry into host cells: Opportunities for therapeutic intervention.
|
| |
Med Res Rev,
26,
414-433.
|
 |
|
|
|
|
 |
L.W.McGinnes,
and
T.G.Morrison
(2006).
Inhibition of receptor binding stabilizes Newcastle disease virus HN and F protein-containing complexes.
|
| |
J Virol,
80,
2894-2903.
|
 |
|
|
|
|
 |
N.D.Day,
P.J.Branigan,
C.Liu,
L.L.Gutshall,
J.Luo,
J.A.Melero,
R.T.Sarisky,
and
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(2006).
Contribution of cysteine residues in the extracellular domain of the F protein of human respiratory syncytial virus to its function.
|
| |
Virol J,
3,
34.
|
 |
|
|
|
|
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D.S.West,
M.S.Sheehan,
P.K.Segeleon,
and
R.E.Dutch
(2005).
Role of the simian virus 5 fusion protein N-terminal coiled-coil domain in folding and promotion of membrane fusion.
|
| |
J Virol,
79,
1543-1551.
|
 |
|
|
|
|
 |
G.F.Gao
(2005).
Filling the hole: evidence of a small molecule binding to the fusion core pocket in human respiratory syncytial virus.
|
| |
Expert Opin Investig Drugs,
14,
195-197.
|
 |
|
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|
 |
H.S.Yin,
R.G.Paterson,
X.Wen,
R.A.Lamb,
and
T.S.Jardetzky
(2005).
Structure of the uncleaved ectodomain of the paramyxovirus (hPIV3) fusion protein.
|
| |
Proc Natl Acad Sci U S A,
102,
9288-9293.
|
 |
|
PDB code:
|
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|
|
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|
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J.L.Douglas,
M.L.Panis,
E.Ho,
K.Y.Lin,
S.H.Krawczyk,
D.M.Grant,
R.Cai,
S.Swaminathan,
X.Chen,
and
T.Cihlar
(2005).
Small molecules VP-14637 and JNJ-2408068 inhibit respiratory syncytial virus fusion by similar mechanisms.
|
| |
Antimicrob Agents Chemother,
49,
2460-2466.
|
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|
|
|
|
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P.J.Branigan,
C.Liu,
N.D.Day,
L.L.Gutshall,
R.T.Sarisky,
and
A.M.Del Vecchio
(2005).
Use of a novel cell-based fusion reporter assay to explore the host range of human respiratory syncytial virus F protein.
|
| |
Virol J,
2,
54.
|
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|
|
|
|
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S.C.Lai,
P.C.Chong,
C.T.Yeh,
L.S.Liu,
J.T.Jan,
H.Y.Chi,
H.W.Liu,
A.Chen,
and
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(2005).
Characterization of neutralizing monoclonal antibodies recognizing a 15-residues epitope on the spike protein HR2 region of severe acute respiratory syndrome coronavirus (SARS-CoV).
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| |
J Biomed Sci,
12,
711-727.
|
 |
|
|
|
|
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T.L.Gower,
M.K.Pastey,
M.E.Peeples,
P.L.Collins,
L.H.McCurdy,
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A.Guth,
T.R.Johnson,
and
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(2005).
RhoA signaling is required for respiratory syncytial virus-induced syncytium formation and filamentous virion morphology.
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| |
J Virol,
79,
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W.Ou,
and
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(2005).
Inhibition of murine leukemia virus envelope protein (env) processing by intracellular expression of the env N-terminal heptad repeat region.
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| |
J Virol,
79,
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A.McGill,
J.Greensill,
R.Marsh,
A.W.Craft,
and
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| |
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74,
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|
|
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B.J.Bosch,
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R.Van Der Zee,
J.Lepault,
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and
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PDB code:
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The most recent references are shown first.
Citation data come partly from CiteXplore and partly
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only a partial list as not all journals are covered by
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Where a reference describes a PDB structure, the PDB
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