pan•dit

PANDIT Protein and Associated NucleotideDomains with Inferred Trees

FAM  PF04229
PID  UPF0157
DES  Uncharacterised protein family (UPF0157)
IPR  IPR007344
ANO  10
ALN  243
AID  0.27462
APH  ((((((Y2534_DEIRA/3-185:0.50364,Y3154_VIBCH/3-188:1.50259):0.44351,(GRPB_BACPF/1-174:0.49355,Q99VN5_STAAM/1-171:1.28950):0.26782):0.20725,YQKA_BACSU/136-314:0.67586):0.16400,Y4798_PSEAE/1-184:0.69598):0.15028,(Y1888_BACHD/4-192:0.42448,YZZE_STRCO/1-181:0.60063):0.26496):0.95303,COAE_MYCTU/184-396:0.29519,COAE_MYCLE/185-399:0.28351);
ATP  ((((((Y2534_DEIRA/3-185,Y3154_VIBCH/3-188),(GRPB_BACPF/1-174,Q99VN5_STAAM/1-171)),YQKA_BACSU/136-314),Y4798_PSEAE/1-184),(Y1888_BACHD/4-192,YZZE_STRCO/1-181)),COAE_MYCTU/184-396,COAE_MYCLE/185-399);
ATL  9.29264
DNO  10
DLN  729
DID  0.383944
DPH  ((((((Y3154_VIBCH/3-188:0.91940,(GRPB_BACPF/1-174:0.29754,Q99VN5_STAAM/1-171:0.76193):0.16711):0.13518,YQKA_BACSU/136-314:0.37928):0.30443,Y2534_DEIRA/3-185:0.60191):0.12445,Y4798_PSEAE/1-184:0.46486):0.08355,(Y1888_BACHD/4-192:0.53741,YZZE_STRCO/1-181:0.34361):0.15227):0.46724,COAE_MYCTU/184-396:0.24391,COAE_MYCLE/185-399:0.23938);
DTP  ((((((Y3154_VIBCH/3-188,(GRPB_BACPF/1-174,Q99VN5_STAAM/1-171)),YQKA_BACSU/136-314),Y2534_DEIRA/3-185),Y4798_PSEAE/1-184),(Y1888_BACHD/4-192,YZZE_STRCO/1-181)),COAE_MYCTU/184-396,COAE_MYCLE/185-399);
DTL  6.24004
RID  0.27462
RPH  ((((((Y2534_DEIRA/3-185:0.50364,Y3154_VIBCH/3-188:1.50259):0.44351,(GRPB_BACPF/1-174:0.49355,Q99VN5_STAAM/1-171:1.28950):0.26782):0.20725,YQKA_BACSU/136-314:0.67586):0.16400,Y4798_PSEAE/1-184:0.69598):0.15028,(Y1888_BACHD/4-192:0.42448,YZZE_STRCO/1-181:0.60063):0.26496):0.95303,COAE_MYCTU/184-396:0.29519,COAE_MYCLE/185-399:0.28351);
RTP  ((((((Y2534_DEIRA/3-185,Y3154_VIBCH/3-188),(GRPB_BACPF/1-174,Q99VN5_STAAM/1-171)),YQKA_BACSU/136-314),Y4798_PSEAE/1-184),(Y1888_BACHD/4-192,YZZE_STRCO/1-181)),COAE_MYCTU/184-396,COAE_MYCLE/185-399);
RTL  9.29264
LNK  COAE_MYCLE/185-399:Q50178:Z46257
LNK  COAE_MYCTU/184-396:P63826:BX842577
LNK  GRPB_BACPF/1-174:Q45133:U39410
LNK  Q99VN5_STAAM/1-171:Q99VN5:BA000017
LNK  Y1888_BACHD/4-192:Q9KBN7:AP001513
LNK  Y2534_DEIRA/3-185:Q9RRF8:AE002082
LNK  Y3154_VIBCH/3-188:Q9KMJ4:AE004372
LNK  Y4798_PSEAE/1-184:Q9HV11:AE004893
LNK  YQKA_BACSU/136-314:P54564:D84432
LNK  YZZE_STRCO/1-181:Q9K470:AL939130
AMK  xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DMK  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxx.................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
NAM  COAE_MYCLE/185-399
ASQ  R-ARDLWYHRILPFAYNLSQR..QAV--YAPAGLVTSDP.IWLGQAKRIVARLKTTCGHKALRVDHIGSTAVPhypGFPDFQAKDIIDIQITVESLAMADELADP-LLSAG-YPRlehvtgdaaktnarstvDRYEHSSDPN-LWHKR-FHASADPG....-RPTYV...........HIRV--AGWPNQQFGLLFVDWLKANPGVRADYLDVKRTADRLAAGDMGRYADAKEPWLLDAYRRA
DSQ  CGG---GCTCGTGACCTATGGTACCATCGCATATTGCCGTTCGCCTACAACCTGAGTCAGCGT......CAGGCGGTC------TATGCACCGGCAGGTTTGGTCACGTCTGATCCG...ATCTGGCTGGGGCAGGCGAAGCGCATTGTTGCTCGGCTGAAGACCACGTGTGGCCATAAGGCGTTACGCGTTGACCACATCGGCTCGACCGCGGTGCCGcattatccaGGTTTTCCTGATTTTCAGGCCAAAGACATCATCGACATTCAGATCACCGTCGAGTCACTAGCGATGGCTGACGAACTCGCCGACCCT---CTGTTGTCTGCCGGG---TACCCGCGCctggagcacgtcaccggtgatgccgccaagaccaatgcccgcagcaccgtaGATCGCTACGAACACAGTAGCGACCCAAAT---TTATGGCACAAGAGG---TTTCATGCCTCTGCAGACCCCGGT............---CGACCGACATACGTG.................................CATATCCGGGTG------GCTGGCTGGCCGAATCAGCAATTCGGTTTGCTGTTCGTCGACTGGTTGAAAGCTAACCCGGGTGTGCGTGCCGACTACTTGGACGTCAAACGCACGGCGGACCGGCTGGCGGCCGGAGACATGGGCCGTTACGCCGACGCGAAGGAACCATGGCTCCTCGACGCCTACCGGCGAGCG
TRN  10010101100011000
NAM  COAE_MYCTU/184-396
ASQ  RRARDVWNTRVQPFAHNLAQR..QIA--RAPARLVPADP.SWPDQARRIVNRLKIACGHKALRVDHIGSTAVS...GFPDFLAKDVIDIQVTVESLDVADELAEP-LLAAG-YPR.................LEHITQDTEKTDARST-VGRYDHTDsaalWHKRVHasadpgrptnvHLRV--HGWPNQQFALLFVDWLAANPGAREDYLTVKCDADRRADGELARYVTAKEPWFLDAYQRA
DSQ  CGGCGGGCCCGCGACGTCTGGAACACGCGCGTCCAGCCCTTCGCGCACAACCTGGCCCAACGT......CAGATTGCG------CGCGCGCCGGCTAGGTTGGTGCCGGCGGATCCA...AGCTGGCCGGATCAGGCGCGGCGCATCGTCAACCGGCTAAAGATCGCGTGCGGGCATAAGGCCTTGCGAGTTGACCACATTGGGTCAACCGCCGTGTCG.........GGCTTCCCCGATTTTCTAGCCAAGGATGTCATCGACATCCAGGTCACCGTCGAATCACTTGACGTGGCCGACGAGCTGGCCGAGCCC---TTGCTGGCCGCCGGC---TACCCACGC...................................................CTCGAGCACATCACCCAGGACACCGAAAAGACCGACGCTCGCAGCACC---GTCGGCCGCTACGACCACACCGACagtgccgctctgTGGCACAAGCGCGTGCACgcctcggcggatcccggtcggccgaccaacgtgCACCTGCGGGTG------CACGGCTGGCCCAACCAACAGTTCGCCCTGCTGTTCGTCGACTGGCTGGCGGCCAATCCCGGCGCGAGAGAAGACTATTTGACGGTCAAGTGTGACGCCGACAGGCGCGCCGACGGTGAGCTCGCGCGCTACGTCACCGCCAAGGAGCCGTGGTTCCTGGATGCCTACCAGCGGGCA
TRN  10010101100011001
NAM  Y2534_DEIRA/3-185
ASQ  RGGRGVGGGRPEGHGASVEGG..RTR-QTEGMDLISPDPgRWAARFDRHRWRIR--LALPQARTEHIGSTAI-...--GTICAKDVVDILVG---EVDVTAAAQA-LVSAG-Y--.................--VIEGERPN---HIW-LCWPDPQQ....-REAVV...........HVVI--AGGDIWHQRLLFRDFLKRSPAEARAYEALKQRLAAQT-DDWGEYTAQKAAFVARILQRA
DSQ  CGCGGGGGGCGCGGCGTGGGGGGCGGGCGTCCAGAGGGTCATGGGGCGAGTGTAGAGGGTGGC......CGCACCCGT---CAGACTGAAGGCATGGACCTCATCTCGCCTGACCCCggaCGTTGGGCCGCCCGGTTCGACCGGCATCGGTGGCGAATTCGA------CTCGCTCTTCCCCAGGCCCGCACCGAACACATCGGCAGTACAGCCATC---.........------GGCACCATTTGCGCTAAAGATGTGGTGGACATTCTGGTCGGT---------GAAGTAGACGTGACGGCGGCGGCGCAGGCG---CTCGTAAGTGCCGGA---TAT------...................................................------GTCATCGAGGGCGAGCGGCCCAAC---------CACATCTGG---CTGTGCTGGCCGGACCCGCAACAG............---CGCGAAGCGGTAGTG.................................CATGTGGTCATT------GCGGGGGGCGACATCTGGCACCAACGGCTGCTTTTCCGTGATTTCCTGAAGCGCAGTCCTGCCGAGGCCCGGGCTTACGAAGCGCTCAAACAGAGGCTGGCGGCCCAGACC---GACGACTGGGGCGAGTACACCGCGCAGAAAGCCGCTTTCGTCGCCCGAATCCTGCAAAGGGCA
TRN  10010101100011011
NAM  YZZE_STRCO/1-181
ASQ  M-TNSSGRRRPDVTTVEIIGGpeALE-----IGLSDYDA.RWAETYLRHRRRILDALGA-DVDVEHIGSTSV-...--PGLAAKPIVDIVVAVADITSEEDYLDA-LLAAG-Y--.................--ELRVREPG---HRL-VRT-PGRD....-----V...........HVHVYERGAAAVHEYLLFRDHLRADADDRALYENVKRALFEQPWNDMNDYSDAKSDVILAIKSRA
DSQ  ATG---ACGAACAGCAGCGGGCGACGTCGGCCGGACGTCACGACGGTCGAGATCATCGGTGGGccggaaGCGCTCGAG---------------ATCGGGCTCAGCGACTACGACGCC...CGGTGGGCGGAGACCTACCTGCGTCACCGGCGTCGGATCCTCGACGCGTTGGGGGCC---GACGTCGATGTCGAGCACATCGGCTCCACTTCGGTT---.........------CCGGGTCTGGCCGCCAAGCCGATCGTGGACATCGTCGTCGCGGTGGCGGACATCACGTCGGAGGAGGACTACCTCGACGCA---CTGTTGGCGGCCGGG---TAC------...................................................------GAACTGCGGGTTCGCGAGCCAGGA---------CATCGACTC---GTGCGCACA---CCCGGTCGCGAC............---------------GTG.................................CATGTACACGTCTACGAGAGAGGGGCCGCGGCGGTGCACGAGTACCTCCTCTTCCGTGACCACCTGCGCGCGGACGCGGACGATCGCGCCCTGTACGAGAACGTCAAACGAGCCCTGTTCGAGCAGCCGTGGAACGACATGAACGACTACTCCGACGCCAAGAGCGACGTCATCCTCGCGATCAAGTCCCGAGCC
TRN  10010101100011011
NAM  Y1888_BACHD/4-192
ASQ  MKDSSNSTPRTDEELQEVTVG..ELKPHNASITLLEYDP.RWPKLFDREAKRIRSVLGNKALQVEHVGSTSV-...--PGLCAKPIIDILLVVTDSADETTYVPD-LEKVG-Y--.................--TLRIREPDWFEHRV-FKG-PDTD....-IN--L...........HVFS--KGTSEIDRMLRFRDWLRANNSDRDNYARVKRKLAQHEWRQVQHYADAKSSIVQEIMKRA
DSQ  ATGAAGGATAGTTCAAATTCAACGCCTAGAACTGATGAAGAACTCCAAGAGGTTACGGTTGGA......GAGCTTAAGCCTCATAATGCCTCCATTACTCTCTTGGAATATGATCCA...CGTTGGCCTAAACTATTCGACCGAGAAGCTAAACGAATACGTTCAGTACTTGGCAACAAGGCATTACAAGTGGAACACGTAGGATCAACTTCAGTG---.........------CCGGGACTGTGTGCTAAGCCCATCATTGATATCCTACTCGTTGTGACTGATTCTGCTGACGAAACGACCTATGTTCCCGAC---TTAGAGAAAGTCGGC---TAT------...................................................------ACGTTACGTATTCGTGAACCTGATTGGTTTGAGCATCGTGTT---TTCAAGGGA---CCTGATACAGAC............---ATCAAC------CTA.................................CACGTATTCAGC------AAAGGAACATCCGAGATTGACCGAATGTTGCGCTTCCGAGATTGGTTACGGGCCAACAATTCAGACCGGGACAACTACGCTCGTGTTAAACGCAAACTTGCTCAGCATGAATGGCGACAAGTGCAACACTACGCAGATGCTAAAAGCTCGATTGTCCAAGAAATCATGAAGCGAGCA
TRN  10010101100011000
NAM  Y4798_PSEAE/1-184
ASQ  M--SSPQPPRFDG--QRWSN-..-AD--DDRIEVLPADP.AWPQHFAAEAEAIRTALALPGLGIEHVGSTAV-...--PGLDAKPIIDILLLPPPGHDPQRLVAP-LEGLG-Y--.................--QFWRENPNTQRMFF-VKGMPPFG....-HGRTH...........HVHV--MPLAQADRYLLFRDWLRNHPDDARLYAETKHALARRYPTDREAYTRGKDEVVARILGRA
DSQ  ATG------TCCTCACCCCAACCGCCCCGCTTCGACGGC------CAACGCTGGAGCAAC---......---GCCGAC------GACGACCGCATCGAGGTGCTGCCTGCCGACCCC...GCCTGGCCACAACACTTCGCCGCCGAAGCCGAGGCCATCCGCACGGCGCTGGCGCTGCCCGGGCTGGGCATCGAGCATGTCGGCAGCACCGCGGTG---.........------CCCGGGCTCGACGCCAAGCCGATCATCGACATCCTCCTGCTGCCGCCGCCCGGCCACGATCCGCAGCGGCTGGTAGCCCCG---CTGGAGGGCCTCGGC---TAC------...................................................------CAGTTCTGGCGCGAGAACCCGAACACCCAGCGGATGTTCTTC---GTCAAAGGCATGCCGCCCTTCGGC............---CATGGCCGCACCCAC.................................CATGTCCATGTC------ATGCCCCTGGCCCAGGCCGACCGCTACCTGCTGTTCCGCGACTGGCTGCGCAACCACCCCGACGACGCCCGCCTCTACGCCGAAACCAAGCACGCCCTGGCCCGCCGCTACCCCACCGACCGCGAGGCCTATACCCGTGGCAAGGACGAGGTCGTCGCAAGGATTCTCGGCCGGGCG
TRN  10010101100011001
NAM  YQKA_BACSU/136-314
ASQ  ---KAAQGLLLSVFHLYPKR-..--K-----VEIILYNE.KWAECFDEEKERLKLVFGPEIIAIHHIGSTSI-...--PNMAAKPIIDMLIEVRSIEAVSQFDEQ-MKANG-Y--.................--TPKGENGIAGRRYF-QKG----G....-NKRTH...........HVHMYEQGNPAIERHLLFRDYLRAHPNIAKEYAVLKKQLAAQHPDSINQYIQGKDEWIKTAEENA
DSQ  ---------AAAGCAGCGCAGGGTCTATTGCTGTCGGTCTTTCATTTGTATCCGAAAAGA---......------AAA---------------GTTGAGATCATTCTCTACAACGAA...AAATGGGCAGAATGTTTCGATGAAGAAAAAGAACGGCTGAAACTTGTGTTCGGGCCGGAGATTATCGCTATTCATCACATCGGAAGCACATCAATA---.........------CCTAACATGGCAGCGAAGCCAATCATTGATATGTTAATTGAAGTCAGAAGCATTGAAGCCGTGAGCCAATTTGATGAACAA---ATGAAGGCCAACGGC---TAT------...................................................------ACACCAAAAGGTGAGAACGGTATAGCGGGCAGGCGTTATTTC---CAAAAGGGC------------GGA............---AATAAACGCACTCAT.................................CATGTCCATATGTACGAACAGGGAAACCCTGCTATTGAAAGGCATCTGTTATTCAGAGATTATCTCAGAGCTCATCCAAACATAGCGAAAGAATACGCCGTTCTCAAAAAACAGCTGGCGGCCCAGCACCCTGACAGCATCAATCAGTATATACAAGGGAAAGATGAGTGGATCAAGACTGCAGAAGAAAATGCG
TRN  10010101100011000
NAM  GRPB_BACPF/1-174
ASQ  M-------LGVNK-------G..EVI-------LVTHSE.NWKRLFHKEKSLLETIIGEQVKDIQQFGSTAI-...--KGIEAKPIIDILVGVESLKDVEKFNNERLKEAGYY--.................--HLSRVQIDGKEVFAKFTDLENLT....-KTHIL...........HVVE--YQGDWWNEHISFRDYLNANPLVSKEYESLKKNLAEKYPNDEHSYTNEKTQFVDEILNEM
DSQ  ATG---------------------TTAGGGGTTAACAAA---------------------GGT......GAAGTGATT---------------------TTAGTTACTCATTCTGAA...AATTGGAAGAGGTTATTTCATAAAGAAAAATCTTTATTGGAGACGATTATTGGGGAACAGGTAAAGGATATTCAACAATTTGGCAGTACAGCAATC---.........------AAGGGCATTGAAGCAAAACCTATTATTGATATATTGGTTGGTGTAGAGTCATTAAAGGATGTTGAAAAGTTTAATAATGAAAGATTAAAAGAAGCTGGATATTAT------...................................................------CATTTATCCAGAGTTCAAATTGATGGAAAAGAGGTTTTTGCTAAGTTTACTGACTTAGAAAACCTAACC............---AAGACACATATTCTT.................................CACGTTGTTGAA------TATCAAGGTGATTGGTGGAACGAACACATTTCATTCAGAGATTATTTAAATGCAAATCCATTAGTTTCTAAGGAATATGAGTCACTCAAGAAAAATCTAGCAGAAAAATACCCTAACGATGAACATTCATATACAAATGAAAAGACCCAGTTTGTTGATGAAATTTTGAATGAAATG
TRN  10010101110011000
NAM  Q99VN5_STAAM/1-171
ASQ  M-YSNVQPFINSD----LTN-..--C-------------.-FQSQYTEIESLLFNLLDSPVKYTKHIGGTHH-...--FKYSTEPILDILVGVENLHDITSLDEKRLNYVGFY--.................--RLHHKYTK-KVMMAKFNNFHELK....-QQVRL...........HIIQ--MNTQTFESYLA-LDYLLSTNDDIALQFNTKKHQILQHSLTIRQYEMQKQQYFEKLCKKY
DSQ  ATG---TATTCAAATGTTCAACCATTCATTAATAGTGAT------------TTAACTAAT---......------TGT---------------------------------------...---TTTCAATCACAATACACTGAAATTGAATCATTATTATTCAACCTCTTAGACAGCCCAGTAAAATATACAAAACATATTGGCGGTACGCATCAT---.........------TTTAAATATTCAACAGAGCCAATTTTAGATATTTTAGTAGGTGTAGAAAATTTGCATGATATTACATCCTTAGATGAAAAACGCTTAAATTATGTAGGGTTTTAT------...................................................------CGTTTGCATCATAAATATACTAAG---AAAGTTATGATGGCGAAGTTTAACAATTTTCATGAACTAAAA............---CAACAGGTGCGTCTA.................................CATATCATTCAA------ATGAATACCCAAACATTTGAATCTTATCTTGCA---CTTGATTACCTCTTATCAACTAATGATGATATTGCTTTGCAATTCAATACAAAAAAGCACCAAATATTGCAACATAGCTTAACAATTAGACAATATGAGATGCAAAAGCAACAATACTTTGAAAAACTATGTAAAAAATAC
TRN  10010101110011000
NAM  Y3154_VIBCH/3-188
ASQ  RGGFGGLCLGLVVMRCQPLRR..ALCLLGDNMQFYKADEyQASCENLYRKYELEIAALLPDASIEHIGTSSI-...--PNAVSKGDLDILVG-VNGKELENAVKL-LSTLG-F--.................--NEKSDTLR---TPE-LCMLENSS....-GEDVA...........FQVV--ANGSEFEFFVGFRDKLRKNPELVQRYNELKISCTGWS---HEEYRRKKSAFIERVLGQA
DSQ  CGCGGTGGTTTCGGTGGTTTGTGTTTGGGTTTGGTTGTTATGCGTTGTCAGCCCCTTAGGCGG......GCGTTATGCCTTTTGGGAGACAATATGCAGTTTTACAAAGCAGATGAAtatCAGGCATCTTGTGAAAACCTGTATCGTAAGTACGAACTTGAGATAGCTGCTTTACTTCCAGATGCATCTATTGAGCATATTGGAACTTCCTCTATT---.........------CCTAATGCTGTATCTAAAGGTGACCTAGACATACTTGTTGGT---GTTAACGGCAAGGAACTAGAAAATGCAGTAAAGTTA---CTTTCTACTCTAGGT---TTC------...................................................------AACGAAAAATCCGATACGTTAAGA---------ACTCCGGAG---CTTTGCATGCTGGAAAATAGCTCA............---GGTGAGGATGTCGCT.................................TTTCAAGTTGTA------GCTAATGGTTCGGAATTTGAGTTTTTTGTGGGGTTTAGAGACAAACTCCGTAAAAATCCTGAGTTAGTTCAACGATACAATGAGCTGAAAATATCTTGTACAGGTTGGTCT---------CACGAAGAGTATCGTCGGAAAAAATCAGCTTTTATTGAGCGCGTGTTAGGGCAGGCA
TRN  10010101100011000
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