Dbfetch
ID BC132413; SV 1; linear; mRNA; STD; MUS; 5340 BP. XX AC BC132413; XX DT 02-FEB-2007 (Rel. 90, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 4) XX DE Mus musculus NLR family, apoptosis inhibitory protein 1, mRNA (cDNA clone DE MGC:164044 IMAGE:40130690), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-5340 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-5340 RG NIH MGC Project RA ; RT ; RL Submitted (31-JAN-2007) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; da18beecde93913f122837308a5b7607. DR Ensembl-Gn; ENSMUSG00000021640; mus_musculus. DR Ensembl-Gn; MGP_AKRJ_G0020811; mus_musculus_akrj. DR Ensembl-Gn; MGP_CBAJ_G0020586; mus_musculus_cbaj. DR Ensembl-Tr; ENSMUST00000022142; mus_musculus. DR Ensembl-Tr; ENSMUST00000222155; mus_musculus. DR Ensembl-Tr; MGP_AKRJ_T0037898; mus_musculus_akrj. DR Ensembl-Tr; MGP_CBAJ_T0037604; mus_musculus_cbaj. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Ambion CC cDNA Library Preparation: British Columbia Cancer Research Center CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson CC Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen CC Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel CC Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave CC Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, CC Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR CC Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, CC Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRCK Plate: 6 Row: F Column: 11. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..5340 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_391" FT /clone="MGC:164044 IMAGE:40130690" FT /tissue_type="Brain,thymus,testicle,kidney,spleen,liver, FT heart,lung,ovary,embryo - PCR rescued clones" FT /note="Vector: pCR-XL-TOPO; Clone identification sequence FT tag: ACAACTCA" FT /db_xref="taxon:10090" FT gene 1..5340 FT /gene="Naip1" FT /note="synonym: Naip-rs1" FT CDS 160..4371 FT /codon_start=1 FT /gene="Naip1" FT /product="Naip1 protein" FT /db_xref="GOA:Q9QWK5" FT /db_xref="InterPro:IPR001370" FT /db_xref="InterPro:IPR007111" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR028789" FT /db_xref="InterPro:IPR032675" FT /db_xref="InterPro:IPR040535" FT /db_xref="InterPro:IPR041075" FT /db_xref="MGI:MGI:1298223" FT /db_xref="UniProtKB/Swiss-Prot:Q9QWK5" FT /protein_id="AAI32414.1" FT /translation="MAEHGESSEDRISEIDYEFLPELSALLGVDAVQLAKSQEEEEHKE FT RMKMKKGFNSQMRSEAKRLKTFETYDTFRSWTPQEMAAAGFYHTGVKLGVQCFCCSLIL FT FGNSLRKLPIERHKKLRPECEFLQGKDVGNIGKYDIRVKSPEKMLRGGKARYHEEEARL FT ESFEDWPFYAHGTSPRVLSAAGFVFTGKRDTVQCFSCGGSLGNWEEGDDPWKEHAKWFP FT KCEFLQSKKSSEEIAQYIQGYEGFVHVTGEHFVNSWVRRELPMVSAYCNDSVFANEELR FT MDTFKDWPHESPVAVDALVRAGLFYTGKKGIVQCFSCGGCMEKCTEGDDPIQEHNKFFP FT NCVFLQTPKSSAEVIPALQSHCALPEAMETTSESNHDDPAAVHSTVVGLGRSEAQWFQE FT ARSLSEQLRDNYTKATFRHMNLPEVCSSLGTDHLIGCDVSIISKHISQPVQGALTIPEV FT FSNLSSVMCVEGETGSGKTTFLKRIAFLWASGCCPLLYRFQLVFYLSLSSITPDQGLAN FT IICAQLLGAGGCISEVCLSSIIQQLQHQVLFLLDDYSGLASLPQALHTLITKNYLSRTC FT LLIAVHTNRVRGIRSYLDTSLEIKEFPLSNTVYILKKFFSHNIKRLLEFMVYFGQNEDL FT QGIHKTPLFVAAVCTDWFENPSDQPFQDMALFKSYMQYLSLKHKGAAKPLQATVSSCGQ FT LALTGLFSSCFEFNSDDLAEAGVDEDEELTTCLMSKFTAQRLRPVYRFLGPLFQEFLAA FT MRLTELLSSDRQEDQDLGLYYLRQINSPLKALTTYNNFLKYVFSHPSSKAGPTVVSHLL FT HLVDETELLENTYKNEDYVNHPPGTSRIMKGLKELWLLSPEYYSSFVSEHLLRIALNFA FT YESNTVAECSPFILQFLRGRTLALKVLNLQYFRDHPESLLLVKSLEVSINGNKVPKVVD FT YSVMEKSFETLQPPTIDQDYASAFEQMKEHEKNLSENEETIKSIKNIFPLQPPKISSGY FT WKLSPKPCKIPRLEVGVTNMGPADQALLQVLMEVFSASQSIEFRLSDSSGFLESIRPAL FT ELSKASVTKCSMSRLELSRAEQELLLTLPALQSLEVSETNQLPDQLFHNLHKFLGLKEL FT CVRLDGKPDVLSVLPGEFPNLLHMEKLSIRTSMESDLSKLVKLIQNSPNLHVFHLKCDF FT LSNCDSLMAVLASCKKLREIEFSGRCFEAMPFVNILPNFISLKILNLISQQFPDKETSE FT KFAQALGSLRNLEELLVPTGDGIHQVAKLIVRQCLQLPCLRVLAFHYILDNDSVIEIAR FT VATSGGFQKLEKLDLSMNHKITEEGYRNFFQALDNLPNLQNLNICRHIPECIQVQATTV FT KALGQCVSRLPSLTRLHMLSWLLDEEDMKVINDVKERHPQSKRLIIFWKWIVPFSPVVL FT E" FT misc_difference 3519 FT /gene="Naip1" FT /note="'T' in cDNA is 'C' in the mouse genome; no amino FT acid change." FT misc_difference 4752 FT /gene="Naip1" FT /note="'A' in cDNA is 'T' in the mouse genome." FT misc_difference 5031 FT /gene="Naip1" FT /note="'T' in cDNA is 'G' in the mouse genome." XX SQ Sequence 5340 BP; 1490 A; 1205 C; 1247 G; 1398 T; 0 other; gcgaggaagc catggagact ccttctccct tgggacatca ggtctcggtt tgtaagcaga 60 ctttagttcc tgttagagag acacaaagtt ctgatatggg aaatctcatt gcaggaaacc 120 acctgaggaa gaagcaggag cctgactgaa ctgaagaaaa tggctgagca tggggagtcc 180 tccgaggatc ggatttctga gattgattat gaatttctcc ctgagctctc tgctcttctc 240 ggggtggatg cagttcagct ggcaaagagc caagaagaag aagagcataa agaacggatg 300 aaaatgaaga aaggttttaa ctcacagatg cgcagtgaag ccaaacgact aaagaccttt 360 gagacctatg acacgttcag atcatggacg ccacaggaga tggcagctgc tgggttttac 420 cacacagggg tgaaacttgg ggttcagtgc ttttgctgta gcttgatcct ctttggcaat 480 agcctcagga agcttcccat agagagacac aagaaattac gtccagaatg tgagttcctt 540 cagggaaaag atgttggtaa cattggcaag tatgacatcc gggtgaagag tccagagaag 600 atgctgagag gtggcaaagc caggtaccat gaagaggagg ccagactgga gtcctttgag 660 gactggccat tttatgccca tgggacatca ccacgtgtac tctcagcagc tggctttgtc 720 tttacaggta aaagggacac tgtgcagtgt ttttcctgtg gcggaagctt gggcaactgg 780 gaagaaggag atgacccctg gaaggagcat gccaagtggt tccccaaatg tgaatttctt 840 caaagtaaga aatcttcaga ggaaattgcc cagtatatcc aaggctatga gggatttgtt 900 catgtaacgg gagaacattt tgtgaattcc tgggtcagaa gagaattacc tatggtatca 960 gcttactgca acgacagcgt cttcgctaat gaagaactaa ggatggacac gtttaaggac 1020 tggccccacg aatcacctgt ggctgttgat gctttggtca gagctggcct tttctacaca 1080 ggcaaaaagg gcattgtcca gtgtttttcc tgtggaggat gtatggagaa gtgcacagaa 1140 ggtgacgacc caatacaaga gcacaacaag ttttttccca actgtgtatt tctccaaacc 1200 ccgaagtcct ctgcagaagt gattccagcc cttcagagcc actgtgcact tccagaagcc 1260 atggaaacca caagtgaaag caaccacgat gatccagcag cagttcattc tacagtggtg 1320 ggcttgggta ggagtgaagc ccagtggttt caagaggcca ggagtctgag tgagcagcta 1380 agagacaact acactaaagc cacttttcgc cacatgaact tgccagaagt gtgctccagc 1440 cttggcactg accacttgat cggctgcgat gtgtccatca tttcaaagca catcagccag 1500 cctgtgcaag gggccctgac gatccctgag gtcttctcca atctcagctc tgtcatgtgt 1560 gtggaggggg aaactggcag tggaaagaca accttcctga agaggatagc ttttctctgg 1620 gcatcaggat gctgcccctt gttgtacagg ttccagctgg tcttctacct ctcccttagt 1680 tccatcacac cagaccaggg actggccaac atcatctgtg cccaactcct aggggcagga 1740 ggctgcatta gtgaagtgtg tctgagcagc atcatccagc agttacaaca ccaggtgctg 1800 ttcctgttgg atgactacag tgggctggcc tcactccccc aagccctaca tacactgatt 1860 acaaaaaact acttgtcacg gacctgctta ttgatcgctg tgcatacaaa cagggtcagg 1920 ggcatccgct catacctaga tacgagtcta gagatcaaag agtttccctt gtccaatact 1980 gtctatatat taaagaagtt cttctcccat aatataaaac gtctactaga gtttatggtt 2040 tattttggac agaatgaaga tttacaggga attcacaaga cccccctctt cgtggcagca 2100 gtatgtactg actggtttga aaatccatct gaccagccct ttcaggatat ggcacttttc 2160 aagtcctaca tgcaatacct gtccttaaag cacaaaggtg cagctaagcc tctccaagcc 2220 accgtgtcct catgtgggca gctggccttg acagggcttt tctcatcatg ctttgagttc 2280 aatagtgatg acctggcaga ggcaggagtt gatgaagatg aagagctcac cacctgcttg 2340 atgagcaaat tcaccgccca gagactgagg ccagtctacc ggtttttagg tccgctgttc 2400 caggagtttc ttgctgccat gagactgact gaacttctga gttcagatag gcaggaagac 2460 caagatctgg gactttatta tttgagacaa attaactcac ccttgaaggc tttgaccacc 2520 tacaacaatt ttttgaagta tgtctttagc catccgtcat caaaggcagg gccaacagtt 2580 gtatctcatt tgcttcactt ggtggatgag acagagttgc tggagaatac ctataaaaat 2640 gaggattatg taaatcaccc tccaggaact tcccgaataa tgaagggact taaggaactg 2700 tggctgttat ctcctgaata ttactcttca tttgtttcag aacatttatt gcgcattgct 2760 ctaaactttg cttatgaaag caacactgtt gctgaatgtt ctccatttat tttgcagttc 2820 cttagaggga gaacactggc tttgaaagta ctgaatttac aatactttag ggaccaccca 2880 gaaagcctgt tactggtgaa gagtttagaa gtctcgataa atggaaataa agtgccaaaa 2940 gttgtagatt attcagtcat ggaaaaaagt tttgaaacat tacagccacc aactatagat 3000 caggactatg catccgcctt tgaacaaatg aaggaacatg aaaaaaattt atctgaaaat 3060 gaagagacca taaagagtat taagaacatc ttccccttac agccacctaa aataagctct 3120 ggctattgga aactgtcccc caagccatgc aagatcccta ggctggaagt tggagtgacc 3180 aacatgggtc cagcagatca agcactgctc caggtcctca tggaagtctt ctcagcttca 3240 cagagtattg agttccgttt atccgacagc agtggcttcc ttgaaagcat ccgcccagct 3300 ctggagctga gtaaggcctc tgtcaccaag tgttccatgt ccaggctgga gctcagcaga 3360 gcagaacagg agctgcttct caccctgcct gccctgcagt ctctcgaggt ctcagagaca 3420 aaccagttac cagatcagct cttccataac ttgcacaagt tcctgggcct gaaagaactg 3480 tgtgtgagac tagatggcaa accggatgtg ctctcagttc ttcctggaga gttcccaaac 3540 ctccttcaca tggagaagtt atccatccga acctccatgg agtctgacct ctccaaacta 3600 gttaaattga ttcagaactc tccaaatctc catgttttcc atctgaaatg tgatttcctt 3660 tcgaattgtg actctctcat ggctgtgctt gcttcctgca agaaactcag agagattgag 3720 ttttctggac gatgctttga agccatgccc tttgttaaca ttttgccaaa ttttatttct 3780 ctgaagatat taaatcttat aagccaacaa ttcccagata aggaaacatc agaaaagttt 3840 gcccaggctc tgggttctct caggaacctg gaggaactgc tcgttcccac tggagacggg 3900 attcaccaag tggccaaatt gattgtccgg cagtgtctgc agcttccgtg tctccgagtt 3960 cttgcctttc actacatctt ggacaatgac agtgtgattg aaattgccag ggtggcaacc 4020 agtggaggtt tccagaaact cgagaagtta gatctttcca tgaatcacaa gattaccgag 4080 gaaggatata gaaatttctt tcaagccctg gacaacctgc caaacttgca gaatctgaac 4140 atctgcagac atatcccaga atgcattcaa gttcaggcca ccactgtcaa ggctctgggt 4200 caatgtgtgt cccgactgcc cagcctcact aggctgcaca tgctcagttg gctcctggat 4260 gaagaggaca tgaaagtgat taatgatgtg aaggaaagac acccccagtc caaacgcttg 4320 attatcttct ggaaatggat agtcccgttc tctcctgttg tcctggagta aaggatgctc 4380 ctgaagacta ctgatagttc agaataccag atttcctaaa acactttact ttagctgggc 4440 atggtggtac acacctgtac tttcaacatt taggacactg atgtgcaaga atcaagaagt 4500 tcagaccaga tccagtttca cagctaaaga cacaactatc catcctacta aagaatattt 4560 attaagtgtg cagactgcta attttttttc agaagtctgc atgcccacta ttgaattcag 4620 tagctatatt gctcaatgcc ttggcagtcc ttatttggtc ttcctgtctg aagactagag 4680 cctcagtcac gttcatatag agaactgtca atgccaaggt caacaggaag gcgctgggaa 4740 aggaacatcg aactatgtag aagccacatc cggaagtagt atttgatagg tgctggggta 4800 gtgcaagagg aacagcaaaa cagctttaga actcacggaa cgcagtctcc tggttagcac 4860 aaactcatgg gtgggtctcc gagagaacta tgggtcctga gagcttcatg gtgtcataga 4920 gatttgctct gcttgctgcc ttctcactgt gttactcata atctatgagt tttatgaact 4980 ctctaggggg cttaacaacc cctcactggg cagtgtcatt gtcactcaca tcagcagtgc 5040 ttgatcttca agatcaatga ttcaatcacc acccttggaa agaacttaga aatgtacatt 5100 gttagaaatg accaccagtc ttaagaattt ggagaagtag attgtcagta aagttaggtt 5160 aagatgtttt tgttaatggc tctgatgttg aaaaatctta gaaatcaaat agaaattcag 5220 aaaagcccac ttttgattat tgatcaaggg atgttttcaa gatcaggaac aagaacaatg 5280 gcagctcagc tagcactggc tgatgtgact cttgctgaag ctgggctgat gatcgaggtg 5340 //