Dbfetch
ID BC023893; SV 1; linear; mRNA; STD; MUS; 2083 BP. XX AC BC023893; XX DT 24-SEP-2002 (Rel. 73, Created) DT 21-OCT-2008 (Rel. 97, Last updated, Version 13) XX DE Mus musculus cysteine-rich with EGF-like domains 1, mRNA (cDNA clone DE MGC:36401 IMAGE:5310111), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2083 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2083 RG NIH MGC Project RA ; RT ; RL Submitted (05-FEB-2002) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 2cc83a91949cc3291546807688ac0166. DR Ensembl-Gn; ENSMUSG00000030284; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0031127; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0031096; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0031027; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0031107; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C57BL6NJ_G0031566; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0030214; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0030793; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0030946; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0030900; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0031026; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0030934; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0031593; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0029930; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0030298; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000032422; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0079344; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0079416; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0079338; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0079359; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C57BL6NJ_T0079834; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0079566; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0078944; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0079096; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0078980; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0079126; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0078985; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0080082; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0078994; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0078087; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Jeffrey E. Green, M.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: National Institutes of Health Intramural CC Sequencing Center (NISC), CC Gaithersburg, Maryland; CC Web site: http://www.nisc.nih.gov/ CC Contact: nisc_mgc@nhgri.nih.gov CC Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., CC Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., CC Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., CC Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., CC Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., CC McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., CC Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., CC Young,A., Zhang,L.-H. and Green,E.D. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 56 Row: e Column: 7 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 19527147. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..2083 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Li9" FT /clone="MGC:36401 IMAGE:5310111" FT /tissue_type="Liver, normal. 5 month old male mouse." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..2083 FT /gene="Creld1" FT misc_difference 1..5 FT /gene="Creld1" FT /note="5 bases at the 5' end do not align to the mouse FT genome." FT misc_difference 7 FT /gene="Creld1" FT /note="1 base in cDNA is not found in the mouse genome." FT misc_difference 10..11 FT /gene="Creld1" FT /note="in the mouse genome : TC." FT CDS 346..1608 FT /codon_start=1 FT /gene="Creld1" FT /product="cysteine-rich with EGF-like domains 1" FT /db_xref="GOA:Q91XD7" FT /db_xref="InterPro:IPR000152" FT /db_xref="InterPro:IPR000742" FT /db_xref="InterPro:IPR001881" FT /db_xref="InterPro:IPR002049" FT /db_xref="InterPro:IPR006212" FT /db_xref="InterPro:IPR009030" FT /db_xref="InterPro:IPR013032" FT /db_xref="InterPro:IPR018097" FT /db_xref="InterPro:IPR021852" FT /db_xref="MGI:MGI:2152539" FT /db_xref="UniProtKB/Swiss-Prot:Q91XD7" FT /protein_id="AAH23893.1" FT /translation="MAPLPPRGLVPSLLWCLSLFLSLPGPVWLQPSPPPHPSPRAEPHP FT CHTCRALVDNFNKGLERTIRDNFGGGNTAWEEEKLSKYKDSETRLVEVLEGVCSRSDFE FT CHRLLELSEELVENWWFHRQQEAPDLFQWLCSDSLKLCCPSGTFGPSCLPCPGGTERPC FT GGYGQCEGEGTRGGSGHCDCQAGYGGEACGQCGLGYFEAERNSSHLVCSACFGPCARCT FT GPEESHCLQCKKGWALHHLKCVDIDECGTEQATCGADQFCVNTEGSYECRDCAKACLGC FT MGAGPGRCKKCSRGYQQVGSKCLDVDECETVVCPGENEKCENTEGGYRCVCAEGYRQED FT GICVKEQVPESAGFFAEMTEDEMVVLQQMFFGVIICALATLAAKGDLVFTAIFIGAVAA FT MTGYWLSERSDRVLEGFIKGR" FT misc_difference 2046..2083 FT /gene="Creld1" FT /note="polyA tail: 38 bases do not align to the mouse FT genome." XX SQ Sequence 2083 BP; 438 A; 583 C; 607 G; 455 T; 0 other; ccacgcgtcc gggaatattt tgggatccaa ccctctctct aattttggcc cctaataact 60 cactgagacc ctaaaacaat gggctgacgc ttattctttt gcccgcgatc ccggccacct 120 ccccctacgg taacggagaa ataatttctc tgctggaatc gtagattagg ctctttcacc 180 ccttccagcg cctctgcttc cactacccca gtttatcctc gttttgtaat tacgtaggtc 240 tggggctctg agccccaagg cgcctcgctt tcctccctta cagcctggct tctccagtga 300 accctccccc tgccctctat ctgcacgtcc ccagcctggg aaaagatggc tccactgccc 360 ccaaggggcc tggtcccatc tctgctctgg tgcttgagcc tgtttctgag cctcccagga 420 cctgtctggc tccaaccctc tcctcctccc catccttctc cccgagctga gccccatccg 480 tgtcatacct gccgggcact ggtggacaac ttcaacaagg gcctggagag aaccatccgg 540 gacaacttcg ggggtggaaa cacggcctgg gaggaagaga agttgtccaa atacaaagac 600 agtgagaccc gcctggtgga ggtgctggag ggcgtgtgca gcaggtcaga cttcgagtgc 660 caccgcctgc tcgagctgag cgaggagctg gtggaaaact ggtggtttca caggcagcag 720 gaagcccccg acctcttcca gtggctctgt tccgattccc tgaagctctg ctgcccctct 780 ggcacctttg ggccctcctg cctgccatgt cctgggggca cagagaggcc ctgcggtggc 840 tacgggcagt gtgaagggga agggactcga gggggcagcg ggcactgtga ctgccaagcc 900 ggctatgggg gcgaggcctg tggccagtgt ggccttggct actttgaggc ggagcgcaac 960 agcagccatc tggtatgttc ggcgtgtttt ggtccttgtg cccgctgcac gggacctgag 1020 gaatcccatt gtctgcagtg caagaaaggc tgggccctgc atcacctcaa gtgtgtagac 1080 atcgatgagt gtggtacaga gcaagccacc tgtggagctg accagttctg tgtgaacaca 1140 gaaggatcct acgagtgccg agactgtgca aaggcctgcc tgggctgtat gggagcaggg 1200 ccagggcgct gcaaaaagtg cagccgtggc taccagcagg tgggctccaa gtgcctagat 1260 gtggatgagt gtgagactgt ggtgtgtcca ggagagaatg agaagtgtga aaacacggag 1320 ggaggctacc gctgtgtctg tgctgagggc tacagacagg aggacggcat ctgcgtgaag 1380 gagcaggtcc cggagtcggc gggcttcttt gcggagatga cggaggatga aatggtggtt 1440 ctgcagcaga tgttctttgg tgtaatcatc tgtgcgctgg ccacgcttgc tgccaagggt 1500 gacttggtgt tcactgccat cttcattgga gctgtggcag ccatgactgg gtactggttg 1560 tcagagcgga gtgaccgtgt gctggagggc ttcatcaagg gtagataatc cctgccgcca 1620 ctcacaggat ttcctcccac ccaggctgct cctagaggtt atttctctct ccctatggat 1680 acctgggaca gcatagtttc tctttgagac tggggtaaac acccttttac ctgccttact 1740 gagcagccca ggaccccagt ggccccaggg ggttgaaaaa gaggtcctga agcagatgcc 1800 acgagatcct agcctaggac actggcaggc ctcaccgtgt atgaatccca agacagtttc 1860 tccccaggga ggttgcaggt gggctttggc ccctgacccg gatgagaggt gtcccctcag 1920 gggtgggccc ccataggccc cttgccaggt gcatgctgcc agctccagct gtgtattcac 1980 cgcccacgcc ctagccatcg acttatttat tcatctcagg aaataaagga cggtcttgaa 2040 aatggaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa 2083 //