Dbfetch
ID AK079252; SV 1; linear; mRNA; HTC; MUS; 1325 BP. XX AC AK079252; XX DT 13-DEC-2002 (Rel. 74, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 12) XX DE Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched DE library, clone:9530056K14 product:c-mer proto-oncogene tyrosine kinase, DE full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1325 RA Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., RA Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., RA Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K., RA Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., RA Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., RA Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., RA Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., RA Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., RA Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., RA Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., RA Hayashizaki Y.; RT ; RL Submitted (16-APR-2002) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; bb4d36694b591a3106122b5c25209d72. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=9530056K14 XX FH Key Location/Qualifiers FH FT source 1..1325 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /sex="male" FT /dev_stage="adult" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="9530056K14" FT /tissue_type="urinary bladder" FT /db_xref="taxon:10090" FT CDS <1..647 FT /codon_start=3 FT /transl_table=1 FT /note="c-mer proto-oncogene tyrosine kinase (MGD|MGI:96965, FT evidence: Direct assignment)" FT /note="putative" FT /note="start codon is not identified" FT /db_xref="GOA:Q8C584" FT /db_xref="InterPro:IPR000719" FT /db_xref="InterPro:IPR001245" FT /db_xref="InterPro:IPR011009" FT /db_xref="MGI:MGI:96965" FT /db_xref="UniProtKB/TrEMBL:Q8C584" FT /protein_id="BAC37589.1" FT /translation="FGVTMWEITTRGMTPYPGVQNHEMYDYLLHGHRLKQPEDCLDELY FT DIMYSCWSADPLDRPTFSVLRLQLEKLSESLPDAQDKESIIYINTQLLESCEGIANGPS FT LTGLDMNIDPDSIIASCTPGAAVSVVTAEVHENNLREERYILNGGNEEWEDVSSTPFAA FT VTPEKDGVLPEDRLTKNGVSWSHHSTLPLGSPSPDELLFVDDSLEDSEVLM" XX SQ Sequence 1325 BP; 368 A; 319 C; 310 G; 328 T; 0 other; tttttggcgt gacaatgtgg gaaataacaa cacggggaat gactccctat cccggagttc 60 agaaccatga gatgtacgac taccttctcc acggccacag gctgaagcag cctgaggact 120 gcttggatga actgtatgac atcatgtact cttgctggag tgctgatccc ttggatcgac 180 ccaccttctc tgtgttgagg ctgcagctgg aaaagctctc cgagagtttg cctgatgcgc 240 aggacaaaga atccatcatc tacatcaata cccagttgct agagagctgc gagggcatag 300 ccaatgggcc ctcactcacg gggctagaca tgaacattga ccctgactcc atcattgcct 360 cttgcacacc aggcgctgcc gtcagcgtgg tcacggcaga agttcacgag aacaaccttc 420 gtgaggaaag atacatcttg aatgggggca atgaggaatg ggaagatgtg tcctccactc 480 cttttgctgc agtcacacct gaaaaggatg gtgtcttacc ggaggacaga ctcaccaaaa 540 atggcgtctc ctggtctcac catagtacac tacccttggg gagcccatca ccagatgaac 600 ttttatttgt agatgactcc ttggaagact ctgaagttct gatgtgaagc cagctgagag 660 gaggcatgag agaaccaagc aaatacagct tcctgggatc tggtggtctt agatactttg 720 ttattgctct gataaaacat catgaccaag gcaatcttca agagaaagtg tttaactagg 780 tttactgttt cagggggtta gagtctatga ttgcagaagg aagttatgat ggcaggaaca 840 gctgagtgct tatatcttta agagcaagca ggagacagag agcactctgg gaaatggcac 900 ctatcttttg aaacctcaaa gcctgctccc agtgacaaaa gtccttcaac aggccatacc 960 tcctaatcct tcccaaacaa ttccaccaac tggagaccaa acattcaaat gtatgcgcgt 1020 attggggcca ttcttaagca aaccactaca ctggttatac ctgaggtttt ggtacttgtt 1080 ttccttacca agtagagttc atggccggac agcaccaggt gaaagctgtc aagtcaggtt 1140 tgcaaataca taaccaaggt cttgagagac aactttttat agagatttct tttatacagt 1200 tgcctgcaac taaatcagaa ggctcacaac cacctgtaac tccagttcta gaagactgat 1260 actctcttct ggcctctgag ggcatctgca cacacgaggc atactctcac gcagtcatat 1320 gaatc 1325 //