Dbfetch
LOCUS NM_001276741 6615 bp mRNA linear INV 21-AUG-2024 DEFINITION Caenorhabditis elegans protein-tyrosine-phosphatase (ptp-3), partial mRNA. ACCESSION NM_001276741 VERSION NM_001276741.3 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 6615) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 6615) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (21-AUG-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6615) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (26-JUL-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 6615) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003280). On Apr 15, 2020 this sequence version replaced NM_001276741.2. COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..6615 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="II" gene <1..>6615 /gene="ptp-3" /locus_tag="CELE_C09D8.1" /db_xref="GeneID:174685" /db_xref="WormBase:WBGene00004215" CDS 1..6615 /gene="ptp-3" /locus_tag="CELE_C09D8.1" /standard_name="C09D8.1f" /note="Confirmed by transcript evidence" /codon_start=1 /product="protein-tyrosine-phosphatase" /protein_id="NP_001263670.1" /db_xref="GeneID:174685" /db_xref="WormBase:WBGene00004215" /translation="MIQFRNKNNSMNRIARHLRNVARRKGSSLLLFLMLSTVLVAAKE DDPARLVVRPDSSTVVDESKISFFCRADGNPLPSVIWRVNGKSITDHNRISIKSLATG LSTLRFERVSLDDNATVVSCSADNGVANPVVAEASLTVVPRDKVPIGFPQIELHPSLK SVEQGKTAYVSCRVRGDPRAKVLWLRDLIPLDIRADGRYSVSTIGNPGALMIQHAREE DQGKYECIARNTLGVAHSKAANLYVKVRRVPPYFSYKLERQYVVGVGGNINLTCVAVG YPMPRVFWKKTDLMVLDDPSTAPIGKNVLTLTHVESTENFTCVAVSALGNIEATTTVI AKELPPPPVNIVVSSVTSESVVITWKPPKYNEAINKYVVNYRLKSENKDDAALFAKDS RAEDESDSERYSEGRSSRGKTMETLENSLVIDGLVAFQTYEFTVRSAGPVGVGLESLP VEAQTKPSKPATAPVSPQARSLNRDSILVKWGPCEQPNGLITGYKVYYTNDLVTTPIR EWKQHDAKSDEFMTTINGLEPDSRYFVRVIAQNSEGDSPLSTLVTVATRQGIPGQPPM LTVKALDSRRMQLTWDKPLYSSPVVGYTVRYNTSDGEKELTLTSPHEKHVVTGLHPDK YYYFRVAAYSDRGQGEFTEPMISKTIASIPLSSPTIVSAAATSSKSVEIRWKGPEQKK LNGVLTAYRINYFRLEDSKTANLESVEYDEDMDDSSSFLDRMSVVVPSDATSYVLSDL LPYSSYEITVAASTMDGYGPESSIRVVKTLEDVPSAPRNFNAELTSATSVKLTWDAPA AANGALLGYYVYLDRMVNGEPVVEKGSKKRIVMIRDSSKRYFELDSLDPNTEYSFRLN AFNRNGDGEFSERKSIITQGIPPEAPEIVSVSLDRDEPPVVARIEWKMPKMKPNETPI EKYNLWLRAQGYPDSYVKAKTVDGTDLSTTISGLWMGVVYDVLLAAENREGRSQNATE TIATPVGSPDGEPIDVQYEVMKGKIVVSWRPPSEEKRNGNITSYKAILSAMDATADRY EQPVPAPSTSSTFEVNVRRAYLFKVAAATMKGIGPYSPVLTINPDPAALVGPPTNVRV EATSNSTAVVQWDFESQKADSFVVKYMHEPGNRMDTEKWKQLPVVSIDKENPKRFAVV SDLNAHKPYAFCVLAVKNNRQGPCSDPPTVLESVTPTYMVQNLRVLWKTSNSVQLTWE YNGPRNVGFYVNHTGRKDYVNHELQEKTMSTPGFGQDVDEKHREYLWTNLRPHMMYTI HVGVRTLPPGARKYWPQEVVTITDPTGPPFVDVPKLVDSSGTQPGQQMIRLTPATEEY GPISHYWIILVPANYSTEDVVNLDPIELEKATAEKRAQLARSLSVSPSKKLKRKASEV GDDSQSASYHPKEKRARRATVPGAYVTARLSADRVKQQYRNNQPFIVGDSQLYDGFTN YPLEHNLHYRLMMRAFAKNDVRTKDSFEQRAPMSEKLSRMYSDSVLTEPFTIKSALRG ASQKSSPWVGACIAFLVLFSIVGMLICWWLRCNKKSAGRHPRHGSITKVALTGNIMNG GGGIPGETSKLLSTSNEYGRQIMNPYEQMNGNHHMESSMDLYPLPTSHSRSNGYAPVP VAIPSLPNNGNNMTTVSHPAVPIAELANHIERLRMNNNAGFQSEFESIETGQHFTWEH SSADMNKHKNRYANVAAYDHSRVVLSNVEGYPGMDYINANYVDGYDKPRSYIATQGPL PETFSDFWRMVWEEQSVTIVMLTNLEERSRVKCDQYWPSRGTATYGDIEVTLLESVHL AHYTMRTMRLKMVGEPEVREIKHLQYTAWPDHGVPDHPTPFLIFLKRVKTLNPNDAGP IISHCSAGIGRTGAFIVIDCMLERLRYDNTVDIYGCVTALRAQRSYMVQTEEQYIFIH DAVLDAVNSGSTEVPASRLHQHLHILSQPSADQLSGIDMEFRHLTTLKWTSNRCTVAN LPVNRPKNRMLSAVPYDSNRVIMRLLPGADGSDYINASWIDGYKERGAYIATQAPTNE TAADFWRAIWEHNSPIIAMLVRTNERGQEQCSDYWPLETGVQVGMLVVEPMAEYDMKH YHLREFRISDINTREVRTVRQFHFMEWPDVGKPHTADHFLDFVTQVHNTYAQFGCTGP ITVHCCSGAGRTAVFIALSIILDRMRAEHVVDVFTTVKLLRTERQNMIQEPEQYHFLY LAAYEYLAAYDNFS" ORIGIN 1 atgatccaat tcagaaacaa gaacaacagt atgaatcgga tagcgcgtca cttacgaaat 61 gtggcacgcc gaaaaggctc gtcgctgctt ctgtttctaa tgctaagtac cgtactggtc 121 gcggcaaaag aggacgaccc cgcccgacta gtcgtccgtc cagactcatc aaccgtcgtc 181 gatgaatcga aaatctcatt tttctgtcga gcagatggaa atccgttgcc tagtgtgatt 241 tggagagtca atggaaaatc cataacagat cataatcgaa tatcaataaa atccttggcc 301 accggcttat cgactctccg tttcgaacgt gtctctctgg atgacaatgc gactgttgtg 361 tcctgctcgg ctgataatgg agttgccaat ccagttgtcg cagaagcatc actaaccgtt 421 gtcccacgag acaaagttcc gattgggttc cctcaaattg aacttcatcc atcattgaag 481 tcggtcgaac aggggaaaac tgcttatgtc tcttgtcggg tccgaggaga tcctcgagca 541 aaagtccttt ggctccgtga cctgatcccg ctagacattc gtgcagatgg tagatactct 601 gtaagtacaa tcggaaaccc tggagccctg atgattcagc atgctcgaga agaagatcag 661 ggaaaatacg aatgcattgc aaggaataca ttaggagttg ctcactcgaa agccgcaaat 721 ctttatgtta aagttcgccg agttcctccc tacttctctt acaaattgga acgtcaatat 781 gttgttggcg tcggcgggaa tatcaacttg acatgcgttg ccgtgggtta tccaatgcca 841 cgtgtcttct ggaaaaagac cgatttgatg gtacttgacg atccttctac tgctccaatt 901 ggcaaaaatg tgctcacact gacacacgtg gaatcgactg aaaacttcac ctgtgttgct 961 gtcagtgctc tcggaaacat tgaggcaaca acgacagtca tagctaaaga acttcctccg 1021 ccaccagtca acattgttgt ctcatcagta acttctgaat ctgtagtgat tacctggaag 1081 ccaccgaaat acaatgaagc tatcaataaa tacgtggtta attataggct caaatctgaa 1141 aacaaagatg atgctgcatt gtttgcgaag gatagtagag ctgaagatga aagtgacagt 1201 gaaagatatt ccgaaggtag atcatcgcgt ggtaaaacca tggagacact agagaatagc 1261 ctggttatag acggtcttgt tgcgtttcag acatacgaat tcacagttcg aagtgccggt 1321 ccagttggcg ttggtttaga gtcattacca gttgaggccc aaacaaaacc aagtaaacca 1381 gcaacagctc ccgtcagtcc acaagccaga agtctgaatc gcgattcgat tctggtgaaa 1441 tggggtccat gtgagcaacc aaacgggctc ataacaggat ataaagtgta ttacacaaat 1501 gatctggtta caactccgat tcgagaatgg aaacaacacg acgcgaaatc agacgaattc 1561 atgaccacca tcaatggcct cgaacctgat tcaagatatt tcgtacgagt gattgctcaa 1621 aactctgaag gcgattcccc attatccaca ttggttacgg tagcaacccg tcaaggaatc 1681 cctggccaac ctccaatgtt gacggttaaa gcgctcgact cgaggcgaat gcaattgaca 1741 tgggacaaac ctctttactc gtctccagtt gttggataca ctgtccgata taacacttcg 1801 gatggagaaa aggagctgac attgacatct cctcatgaaa agcatgtggt gactggattg 1861 catccggata agtattatta ctttagagtt gctgcttact cggatagagg acagggagag 1921 ttcactgaac caatgatttc caaaacgatt gcatcgatac ctctatcctc tccaacaatt 1981 gtgtctgcgg cggcaacgtc ctcgaaaagt gtggaaatcc gatggaaggg tcccgaacag 2041 aaaaagttga acggcgtctt gacggcttat cggattaact actttcgtct cgaggactct 2101 aaaactgcaa atttggaatc ggttgagtac gacgaggata tggacgattc ctcttcattt 2161 cttgatcgaa tgtctgttgt ggtgcctagt gatgcgacct cttatgttct atccgatctt 2221 ctaccgtact catcctacga gattactgtc gcagcgtcga caatggatgg atacggcccg 2281 gaaagctcga ttcgtgttgt gaaaactctt gaggatgtac catcagcgcc tcgaaacttc 2341 aatgcagagc tgaccagtgc cacatcggtc aaactgacat gggatgctcc agcagcggcc 2401 aacggagccc ttctcggcta ctacgtgtac ctggatcgaa tggtgaacgg agaaccggtc 2461 gttgaaaagg gcagcaagaa gcgaatagta atgattcgag attcttcgaa acgatacttt 2521 gagctggata gtctcgaccc gaacaccgag tactcgttcc gattgaacgc attcaacaga 2581 aacggggatg gagagttttc ggagcggaaa agcatcatca cacagggaat tccccccgaa 2641 gcgcccgaga tcgtgtctgt atcactggat cgcgacgagc cacccgtcgt agccagaatt 2701 gagtggaaga tgccgaaaat gaagccgaac gagacaccga tagaaaagta caatctatgg 2761 ttacgcgcac aaggatatcc ggactcatat gtcaaggcga agacagtcga cggaaccgat 2821 ctatcaacta ctatttctgg tctttggatg ggagtagtgt atgatgttct gcttgccgct 2881 gaaaatcgag aaggacgatc ccaaaatgcc acagaaacca tcgcaacgcc ggttggaagt 2941 cccgatggtg aaccgattga tgttcagtac gaagtgatga aaggaaagat cgtcgtttca 3001 tggaggcccc catctgagga gaagagaaat ggtaacatca caagttacaa ggccattttg 3061 tcggcgatgg atgctactgc ggatcgatat gagcaaccgg tgcctgctcc ttccacatca 3121 tcgacattcg aggtgaacgt acgcagagcc tacctgttca aagtagcggc cgccacaatg 3181 aagggtatcg gaccctactc gccagtgctc acaatcaacc ccgatccagc tgcacttgtc 3241 ggacctccta ccaatgttcg cgttgaagcc acaagcaatt cgacagcagt tgtgcaatgg 3301 gatttcgaat cacagaaggc tgactcattt gttgtcaagt acatgcacga gcctggaaac 3361 cgaatggaca cagaaaagtg gaagcagttg cccgttgtga gcatagataa agagaaccca 3421 aaacgatttg cagtggtctc cgacttgaac gcgcataagc catacgcatt ttgtgtgttg 3481 gccgttaaga ataatcgaca agggccttgc tctgatcctc cgactgtcct tgagagtgtc 3541 acgccgacgt atatggttca aaacctgagg gttctgtgga agactagcaa ctctgtgcag 3601 ctcacgtggg agtataatgg tccgcgaaac gtcggattct atgttaatca cactggacgg 3661 aaggattatg tgaatcatga gctccaggag aaaacgatgt cgacaccagg atttggtcaa 3721 gatgttgatg agaagcatcg tgaatatttg tggacgaatc ttcggcctca tatgatgtac 3781 acgatacatg ttggagtaag aacgcttcca cctggagcca gaaagtattg gcctcaagaa 3841 gtggttacaa tcactgatcc aactggacca ccttttgtcg atgttcctaa attggttgat 3901 tcctccggaa ctcaaccagg acagcagatg atcagattga cacctgctac ggaagagtat 3961 ggacctattt ctcattattg gattatactt gttccagcga attatagcac ggaagatgtc 4021 gtaaacctgg atccaattga attggaaaaa gctacggctg aaaagcgcgc ccagcttgcc 4081 agatccttga gcgtgtctcc atcgaaaaag ttgaaacgaa aagcttcgga agttggagat 4141 gattcgcaaa gcgcatctta ccatccgaag gagaagcgag ctcgtcgagc aaccgtgcca 4201 ggagcatatg tgactgcaag gttgagtgct gatcgagtca agcaacaata caggaataat 4261 caaccattta ttgtgggaga ttcacagttg tatgacgggt tcaccaacta cccactcgag 4321 cacaaccttc actaccgact gatgatgcgg gcgtttgcga aaaatgatgt gcgaaccaag 4381 gacagtttcg aacaacgtgc accaatgagc gagaagctgt cccgtatgta ctctgattct 4441 gttctaactg agccattcac aatcaaatcg gctcttcgcg gagcttcgca gaagtcgtct 4501 ccttgggttg gagcgtgcat cgccttcttg gtcttgttct cgattgttgg aatgctgata 4561 tgttggtggt tgcgttgcaa taagaagtct gctggacggc atccacgaca tggttctatc 4621 acaaaggttg cgttgactgg aaatattatg aatggaggtg gtggaatacc tggagaaaca 4681 agcaagttat tatcgacttc caatgaatac ggacgacaga ttatgaaccc ctatgagcag 4741 atgaatggaa atcatcatat ggaatcatcg atggatcttt atcctttgcc aacaagtcac 4801 tctagatcta atggatatgc acctgttcct gtcgcaatac catctcttcc aaataatgga 4861 aacaatatga ctacagtatc ccatccagct gttccgatag ctgaacttgc gaatcatatc 4921 gagaggcttc gaatgaacaa taatgcagga ttccagtcag aatttgaatc tattgaaact 4981 ggacaacact tcacttggga acactcgtct gctgatatga ataagcataa gaatcgatac 5041 gcgaatgtgg ctgcctatga tcattccaga gttgtacttt ccaatgttga aggatatcca 5101 ggaatggatt acatcaacgc aaattatgtg gatggatatg acaaaccaag aagctacatt 5161 gccacccagg gaccactccc ggaaacattt tcggatttct ggagaatggt ttgggaggag 5221 caatcggtta caattgtgat gttaacaaat ctggaggaac gaagtcgagt gaaatgtgat 5281 caatactggc cgagtcgggg aactgccaca tatggagata tcgaggtgac actgttggaa 5341 agcgttcatt tggctcatta tacgatgaga acgatgcgat tgaaaatggt tggagaacct 5401 gaagttcgag agatcaagca tctacagtat actgcatggc cggatcatgg agttcccgat 5461 catccgacac cgtttttgat cttcctgaag agggtgaaaa cgctgaatcc aaacgatgca 5521 ggaccaatca tatcgcattg tagtgctgga attggaagaa ctggagcctt cattgtgatt 5581 gattgtatgc tggaacgtct ccgctacgac aatacagttg atatctatgg atgtgttact 5641 gcgttgagag cacagaggag ttatatggta caaactgaag agcaatacat ctttattcat 5701 gacgctgtcc ttgatgcggt gaacagtgga tccacagagg ttcctgccag tcggttgcat 5761 caacatttgc acattctttc acaaccatca gctgatcaat tgtctggaat tgatatggaa 5821 ttcaggcatt tgacgacact gaaatggacc agcaatcggt gtactgttgc gaatcttccg 5881 gtaaatcgac caaagaaccg gatgctcagc gcagtaccgt atgattcgaa tcgagtaata 5941 atgagattgc ttcctggagc tgacggatcc gattacatca acgcatcatg gattgacggt 6001 tacaaagagc gcggagccta cattgccact caagcaccaa ctaacgagac agccgcagat 6061 ttttggcgag caatttggga gcataacagc ccgataatcg ccatgctggt acggacaaac 6121 gaacgaggac aagagcaatg tagtgactat tggccattgg aaactggagt tcaagttgga 6181 atgctcgtcg ttgagccgat ggctgaatat gatatgaaac attatcatct tcgagagttt 6241 aggatttcgg atattaatac tcgcgaagtc cgaaccgttc gtcaattcca tttcatggag 6301 tggcctgatg tcggaaagcc gcacacagca gatcacttcc tcgactttgt cacccaagtt 6361 cacaatacgt atgctcaatt cggatgtact ggcccgatta cagtacactg ttgctctgga 6421 gccggacgca ctgcagtctt catcgcactt tcgatcattt tggataggat gcgtgctgag 6481 catgttgttg atgttttcac aacggttaaa ctgctccgaa cagaacgtca aaacatgatt 6541 caagagccag agcagtatca cttcctgtat ctagctgcat atgagtacct agccgcctat 6601 gacaatttct cgtag //