Dbfetch
LOCUS XM_040525223 2883 bp mRNA linear PLN 06-APR-2021 DEFINITION PREDICTED: Oryza brachyantha U-box domain-containing protein 35 (LOC102722964), transcript variant X3, mRNA. ACCESSION XM_040525223 VERSION XM_040525223.1 DBLINK BioProject: PRJNA232125 KEYWORDS RefSeq. SOURCE Oryza brachyantha (malo sina) ORGANISM Oryza brachyantha Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_023168.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza brachyantha Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2883 /organism="Oryza brachyantha" /mol_type="mRNA" /bio_material="IRGC:101232" /db_xref="taxon:4533" /chromosome="6" gene 1..2883 /gene="LOC102722964" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 2 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:102722964" CDS 87..2501 /gene="LOC102722964" /codon_start=1 /product="U-box domain-containing protein 35" /protein_id="XP_040381157.1" /db_xref="GeneID:102722964" /translation="MEIQEAAGAGEDGLEMEAPSVSTVAIAVNGSKSSRHALKWALDK FVPEGRVLFRILHVRPIIKMVPTPMGNFIPITQVREDVATAYRKDVEWQANNMLLPYK KMCAQRKVEAEAVLLESDDVPTALSEEINKFNVSKLVLGSSSSIFRRKHKGSKTASRI CECIPSFCTAYVVSKGKLSSVHSATSDNVEAPESISSSTVSSPSSRSLASSVPSEWGD TYGSANVTFHQSSLSSQRDQALANMNKLYNRTGSPSGSGRTEISYHDDTVLTSSHSVN SEAQFSSSSSGKSIYKSFNRDHSFDNSDQASVSDIATNLKHSHDQEYLKLEIDRLRVK LRHLQKLNEIAQNESFDASQKLHKLGIQDIEDEIKLKESELTEEKVRRLIRKKEREQQ EVARREDQFKSDSAEREAKQNNDIQEGDENKTEERIFGRCFDEYNRYTWEEIQASTSS FSVDLMIGKGSYGTVYKAKFHHTVAAVKVLNSPEGCGTQQLQQELEVLGKIRHPHLLL MLGACPEHGCLVYEYMENGSLDDMLQRRNNTPSLTWFDRLRIAWEVATALMFLHSSKP EPIIHRDLKPANILLDRNLVSKIGDVGLSTLLPSMDQYLSTMIKNTAPVGTFCYIDPE YQRTGVVSMKSDVYALGIVILQLLTAKSPMGIAHVVETALEEGHFLDILDASAGQWPQ KEAQELAVLALKCAEMRRRDRPDLSDHVLPALERLKDVAAKAREMALHGQTPPPSHFI CPILQEVMVDPYVASDGYTYDRKAIELWLSMNDKSPMTNLRLPHKNLIPNHSLRSAIM DWRSKG" ORIGIN 1 tgcttttgtt tctaatcctg tggttgtttt cttggaacag tgattagtca ggaggaggaa 61 acaagaatcg acggccgtag ggggggatgg agatccagga ggccgcgggc gccggggagg 121 atgggttgga aatggaggct ccgagcgtga gcacagtggc gattgcggtg aacgggagca 181 agagcagcag gcacgccctc aagtgggcgc tcgacaagtt cgtgcccgag gggagggtcc 241 tcttccggat cttgcatgtc cgcccgatca tcaagatggt gcccactcca atgggaaatt 301 tcattccaat cacacaagtg cgagaagacg tagcaactgc atacaggaaa gatgtggaat 361 ggcaagcgaa caatatgcta cttccttaca agaagatgtg tgctcagaga aaggtagagg 421 ctgaagctgt tctactcgaa tctgatgatg ttcctacagc tttaagcgaa gaaatcaaca 481 aattcaacgt ctctaagtta gttttaggtt cttctagcag catattccga aggaaacaca 541 aaggaagtaa gactgcatcg agaatctgtg agtgcattcc aagcttctgc acagcatacg 601 ttgtctcaaa aggaaaacta tcatctgttc actcagctac atctgataat gttgaagcac 661 ctgaatccat atcttcttca actgtttcat cccctagctc tagaagcctt gcatccagtg 721 taccctcaga atggggagac acgtatgggt cagcaaatgt gacattccac cagtcatctc 781 tgtcatctca gcgtgaccaa gcactggcaa acatgaacaa attatataac aggacaggta 841 gcccttcagg cagtggtagg actgaaatct cctaccatga tgatacagtc ctgacaagtt 901 cgcactcggt gaattcagaa gcacagttca gtagtagcag cagtgggaag tctatctata 961 agagcttcaa tagagatcat tcatttgata actctgacca ggcatctgtt tcggacatcg 1021 caacaaatct gaaacattct catgaccagg agtatctaaa gcttgagatt gacaggctga 1081 gggttaaact acggcatctt cagaagctta atgagatagc tcagaatgaa tcatttgatg 1141 ccagtcagaa attacataag ttgggcatcc aggacattga ggatgaaatt aagcttaaag 1201 agagtgaact gacagaagaa aaggtaagga gattgataag gaaaaaagag agagaacaac 1261 aggaagttgc cagaagagag gatcaattca aaagtgatag tgctgaaagg gaagcaaaac 1321 agaataatga tattcaggaa ggtgatgaga ataagacaga agagaggatt tttgggcggt 1381 gttttgatga gtataatagg tatacctggg aggagataca agcatcgact tcatcattct 1441 ctgttgatct tatgattggc aagggatcat atggcacagt ctacaaggct aagtttcatc 1501 atacagttgc agcagtaaaa gttttgaact ccccggaagg ctgtggaact cagcaattac 1561 aacaggagct tgaggtccta ggtaaaatcc ggcaccctca cttgctcctg atgctaggtg 1621 catgccctga acatggttgc ttggtctatg aatacatgga aaatggtagt ttggatgaca 1681 tgctacaacg gagaaataat acgccgtcct tgacctggtt cgaccgttta agaattgctt 1741 gggaggttgc cactgctctt atgttccttc acagttccaa accagagcct atcatacacc 1801 gggatctgaa gcctgcaaac atactacttg acaggaactt ggttagcaag ataggtgatg 1861 taggcttatc aactttgctt cctagtatgg atcaatacct gtccacaatg atcaagaaca 1921 ctgccccagt gggcactttc tgttacatag atccagagta ccagagaact ggtgtggtct 1981 ccatgaagtc cgatgtgtac gcgctaggga tagtgatatt gcaattgctg acagcgaagt 2041 caccaatggg aattgctcat gttgtggaga ctgcactaga agagggacac tttttggaca 2101 ttctggatgc atctgctggg cagtggcctc agaaagaggc acaggaattg gctgtcctag 2161 ccctcaagtg tgctgaaatg aggcgcagag accgtcccga cttgagtgat catgttcttc 2221 cggcactgga gagactgaag gatgttgcag ccaaggccag agaaatggct cttcatggcc 2281 agacaccacc tccaagtcac ttcatttgcc ccatacttca ggaagtgatg gttgatccat 2341 acgttgcatc agatggttac acatatgacc gtaaggcaat cgagctgtgg cttagtatga 2401 atgacaagtc ccctatgaca aatctgcgat tgccccacaa gaacctgata cccaatcact 2461 cccttcgttc tgcaatcatg gactggagat caaagggcta gcagctgatg cacattctgg 2521 gttgcatcct ccacaatgtt ggcaatcttg cagttgatga attcttttct tttcaaaatg 2581 taaagttttg gcagatctag tgtagaagta gtattcatgt ttgctcaaaa aagaaaaaaa 2641 aagataagtg gtgttcataa agaggttcaa gttgtgcagc tttatcaaaa tatagaaatt 2701 atttcctagc tcataggcag gcattccact tcactgtcct agtgaaggta acaattattt 2761 ttttcccctt tgccatttgt aataatgtgt tgtaagcttg taattagtga tctctcaaca 2821 tttgacctga atgtaggaca acttaatgaa aaactaatat gaagcttgca gagagttgtt 2881 cta //