Dbfetch
LOCUS XM_040525222 2924 bp mRNA linear PLN 06-APR-2021 DEFINITION PREDICTED: Oryza brachyantha U-box domain-containing protein 35 (LOC102722964), transcript variant X2, mRNA. ACCESSION XM_040525222 VERSION XM_040525222.1 DBLINK BioProject: PRJNA232125 KEYWORDS RefSeq. SOURCE Oryza brachyantha (malo sina) ORGANISM Oryza brachyantha Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_023168.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza brachyantha Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2924 /organism="Oryza brachyantha" /mol_type="mRNA" /bio_material="IRGC:101232" /db_xref="taxon:4533" /chromosome="6" gene 1..2924 /gene="LOC102722964" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 2 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:102722964" CDS 128..2542 /gene="LOC102722964" /codon_start=1 /product="U-box domain-containing protein 35" /protein_id="XP_040381156.1" /db_xref="GeneID:102722964" /translation="MEIQEAAGAGEDGLEMEAPSVSTVAIAVNGSKSSRHALKWALDK FVPEGRVLFRILHVRPIIKMVPTPMGNFIPITQVREDVATAYRKDVEWQANNMLLPYK KMCAQRKVEAEAVLLESDDVPTALSEEINKFNVSKLVLGSSSSIFRRKHKGSKTASRI CECIPSFCTAYVVSKGKLSSVHSATSDNVEAPESISSSTVSSPSSRSLASSVPSEWGD TYGSANVTFHQSSLSSQRDQALANMNKLYNRTGSPSGSGRTEISYHDDTVLTSSHSVN SEAQFSSSSSGKSIYKSFNRDHSFDNSDQASVSDIATNLKHSHDQEYLKLEIDRLRVK LRHLQKLNEIAQNESFDASQKLHKLGIQDIEDEIKLKESELTEEKVRRLIRKKEREQQ EVARREDQFKSDSAEREAKQNNDIQEGDENKTEERIFGRCFDEYNRYTWEEIQASTSS FSVDLMIGKGSYGTVYKAKFHHTVAAVKVLNSPEGCGTQQLQQELEVLGKIRHPHLLL MLGACPEHGCLVYEYMENGSLDDMLQRRNNTPSLTWFDRLRIAWEVATALMFLHSSKP EPIIHRDLKPANILLDRNLVSKIGDVGLSTLLPSMDQYLSTMIKNTAPVGTFCYIDPE YQRTGVVSMKSDVYALGIVILQLLTAKSPMGIAHVVETALEEGHFLDILDASAGQWPQ KEAQELAVLALKCAEMRRRDRPDLSDHVLPALERLKDVAAKAREMALHGQTPPPSHFI CPILQEVMVDPYVASDGYTYDRKAIELWLSMNDKSPMTNLRLPHKNLIPNHSLRSAIM DWRSKG" ORIGIN 1 ctcaaagttg tcgcctttgg gggggttttc ttggcgcctc tgtggtttct gaactgttct 61 tgtcgtggtg tgtttttttg gtgattagtc aggaggagga aacaagaatc gacggccgta 121 gggggggatg gagatccagg aggccgcggg cgccggggag gatgggttgg aaatggaggc 181 tccgagcgtg agcacagtgg cgattgcggt gaacgggagc aagagcagca ggcacgccct 241 caagtgggcg ctcgacaagt tcgtgcccga ggggagggtc ctcttccgga tcttgcatgt 301 ccgcccgatc atcaagatgg tgcccactcc aatgggaaat ttcattccaa tcacacaagt 361 gcgagaagac gtagcaactg catacaggaa agatgtggaa tggcaagcga acaatatgct 421 acttccttac aagaagatgt gtgctcagag aaaggtagag gctgaagctg ttctactcga 481 atctgatgat gttcctacag ctttaagcga agaaatcaac aaattcaacg tctctaagtt 541 agttttaggt tcttctagca gcatattccg aaggaaacac aaaggaagta agactgcatc 601 gagaatctgt gagtgcattc caagcttctg cacagcatac gttgtctcaa aaggaaaact 661 atcatctgtt cactcagcta catctgataa tgttgaagca cctgaatcca tatcttcttc 721 aactgtttca tcccctagct ctagaagcct tgcatccagt gtaccctcag aatggggaga 781 cacgtatggg tcagcaaatg tgacattcca ccagtcatct ctgtcatctc agcgtgacca 841 agcactggca aacatgaaca aattatataa caggacaggt agcccttcag gcagtggtag 901 gactgaaatc tcctaccatg atgatacagt cctgacaagt tcgcactcgg tgaattcaga 961 agcacagttc agtagtagca gcagtgggaa gtctatctat aagagcttca atagagatca 1021 ttcatttgat aactctgacc aggcatctgt ttcggacatc gcaacaaatc tgaaacattc 1081 tcatgaccag gagtatctaa agcttgagat tgacaggctg agggttaaac tacggcatct 1141 tcagaagctt aatgagatag ctcagaatga atcatttgat gccagtcaga aattacataa 1201 gttgggcatc caggacattg aggatgaaat taagcttaaa gagagtgaac tgacagaaga 1261 aaaggtaagg agattgataa ggaaaaaaga gagagaacaa caggaagttg ccagaagaga 1321 ggatcaattc aaaagtgata gtgctgaaag ggaagcaaaa cagaataatg atattcagga 1381 aggtgatgag aataagacag aagagaggat ttttgggcgg tgttttgatg agtataatag 1441 gtatacctgg gaggagatac aagcatcgac ttcatcattc tctgttgatc ttatgattgg 1501 caagggatca tatggcacag tctacaaggc taagtttcat catacagttg cagcagtaaa 1561 agttttgaac tccccggaag gctgtggaac tcagcaatta caacaggagc ttgaggtcct 1621 aggtaaaatc cggcaccctc acttgctcct gatgctaggt gcatgccctg aacatggttg 1681 cttggtctat gaatacatgg aaaatggtag tttggatgac atgctacaac ggagaaataa 1741 tacgccgtcc ttgacctggt tcgaccgttt aagaattgct tgggaggttg ccactgctct 1801 tatgttcctt cacagttcca aaccagagcc tatcatacac cgggatctga agcctgcaaa 1861 catactactt gacaggaact tggttagcaa gataggtgat gtaggcttat caactttgct 1921 tcctagtatg gatcaatacc tgtccacaat gatcaagaac actgccccag tgggcacttt 1981 ctgttacata gatccagagt accagagaac tggtgtggtc tccatgaagt ccgatgtgta 2041 cgcgctaggg atagtgatat tgcaattgct gacagcgaag tcaccaatgg gaattgctca 2101 tgttgtggag actgcactag aagagggaca ctttttggac attctggatg catctgctgg 2161 gcagtggcct cagaaagagg cacaggaatt ggctgtccta gccctcaagt gtgctgaaat 2221 gaggcgcaga gaccgtcccg acttgagtga tcatgttctt ccggcactgg agagactgaa 2281 ggatgttgca gccaaggcca gagaaatggc tcttcatggc cagacaccac ctccaagtca 2341 cttcatttgc cccatacttc aggaagtgat ggttgatcca tacgttgcat cagatggtta 2401 cacatatgac cgtaaggcaa tcgagctgtg gcttagtatg aatgacaagt cccctatgac 2461 aaatctgcga ttgccccaca agaacctgat acccaatcac tcccttcgtt ctgcaatcat 2521 ggactggaga tcaaagggct agcagctgat gcacattctg ggttgcatcc tccacaatgt 2581 tggcaatctt gcagttgatg aattcttttc ttttcaaaat gtaaagtttt ggcagatcta 2641 gtgtagaagt agtattcatg tttgctcaaa aaagaaaaaa aaagataagt ggtgttcata 2701 aagaggttca agttgtgcag ctttatcaaa atatagaaat tatttcctag ctcataggca 2761 ggcattccac ttcactgtcc tagtgaaggt aacaattatt tttttcccct ttgccatttg 2821 taataatgtg ttgtaagctt gtaattagtg atctctcaac atttgacctg aatgtaggac 2881 aacttaatga aaaactaata tgaagcttgc agagagttgt tcta //