Dbfetch
LOCUS XM_018113810 2236 bp mRNA linear PLN 12-SEP-2016 DEFINITION PREDICTED: Theobroma cacao E3 ubiquitin-protein ligase COP1 (LOC18612361), transcript variant X3, mRNA. ACCESSION XM_018113810 VERSION XM_018113810.1 DBLINK BioProject: PRJNA341501 KEYWORDS RefSeq. SOURCE Theobroma cacao (cacao) ORGANISM Theobroma cacao Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030850.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Theobroma cacao Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2236 /organism="Theobroma cacao" /mol_type="mRNA" /cultivar="B97-61/B2" /db_xref="taxon:3641" /chromosome="1" gene 1..2236 /gene="LOC18612361" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns" /db_xref="GeneID:18612361" CDS 101..2029 /gene="LOC18612361" /codon_start=1 /product="E3 ubiquitin-protein ligase COP1 isoform X3" /protein_id="XP_017969299.1" /db_xref="GeneID:18612361" /translation="MEEFSTGTEPRVPAVKPDSNPSSFEEVPPLLEAATDVTAAAAVE VAEVDKDLSCPICMQIIKDAFLTSCGHSFCYMCIITHLRNKSDCPCCSQFLTNNQLFP NFLLDKLLKKTSSRQISKTASPVEQFRQALQQGYEVSIKELDNLLSLLAEKKRKMEQE EAERNMQILLDFLNCLRKQKVDELNEVQSDLQFIKEDINSVERHRIDLYRARDRYSVK LRMLGDDSGTGKPWPSSIDKNSSGIVSSSLNVRGGMSAGYLQNKKIDGKAQVSGHGPQ RKDALSGADSQGFNQSGLSIARKKRVHVQFNDLQECYLQKRRQSANQLHVKQESDKNV IHREGYNAGLADFQSVLSTFTRYSRLRVIAELRLGDIFHSANIVSSIEFNRDDELFAT AGVSRRIKVFDFSMVLNDRADVHCPVVEMSTRSKLSCLSWNKYSKNHIASSDYEGIVT VWDVNTRQSLMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKVWCTKQEASVLNIDM KANICCVKYNPGSSNYIAVGSADHHIHYYDLRNISSPLHVFSGHKKAVSYVKFLSENE LASASTDSTLRLWDVKESLPEISKPVTWHRFGSQDMDDADEDAGSHFISAVCWKSDSP TMLTANSQGTIKVLVLAA" ORIGIN 1 cgcacggtgg gtccctggct ttttccccct cttctttttc tccatctcca acagaagaaa 61 atgaatcaaa atgtaatccg aagaaaactg taattaaacc atggaggaat tctcaactgg 121 caccgagccg cgagtgccgg cggtgaagcc ggactctaac ccatcttcct tcgaggaagt 181 tccgccgctg ctcgaagcag ccactgacgt caccgccgcc gctgctgttg aagttgcgga 241 ggtggacaag gacttgtcgt gtccgatttg tatgcagata attaaggacg cctttctaac 301 gtcttgcggc cacagctttt gctacatgtg tattattact catcttcgaa acaagagcga 361 ttgcccttgt tgctctcaat ttctcactaa taatcagctt ttccctaact ttttgctcga 421 taagctattg aagaagactt catctcgtca aatatcaaaa actgcatccc ctgtggaaca 481 gtttcgtcag gcattacagc agggttatga agtttcaatt aaggaactgg acaacctctt 541 gtccctcctc gcagagaaga agagaaaaat ggaacaggaa gaagctgaga gaaatatgca 601 aatactgctg gatttcttaa actgcttgcg gaaacaaaaa gttgatgaac tgaatgaggt 661 acaatctgat ctgcagttta ttaaagagga tataaattct gtggaaagac atagaataga 721 tttgtatcgt gcaagagata ggtactctgt gaaattgcgg atgcttggag atgattctgg 781 cacaggaaag ccatggcctt catccataga caagaacagt agtggaattg tctctagttc 841 ccttaatgtc agaggaggga tgtctgcagg atatcttcaa aacaagaaaa tagatggaaa 901 ggctcaggtg agtggccatg gacctcagag aaaggatgcc ttaagtggag cagactcaca 961 aggtttcaat caatctggtc tgtctattgc aagaaaaaag cgggttcatg tccagttcaa 1021 tgacctacaa gagtgttacc tgcaaaagcg acgtcagtcg gcaaaccaac tacatgttaa 1081 acaggaaagt gataaaaatg tcattcacag agagggttat aatgcaggtc ttgcagattt 1141 tcagtcagtg ctgagtactt ttactcggta cagtcgactt agagttattg cggaactgag 1201 gcttggggat atctttcatt cagccaatat agtatcaagc atagaattta atcgtgatga 1261 tgagttgttt gctactgctg gagtgtctcg gcgcattaag gtttttgatt tctctatggt 1321 cctaaacgat cgagcagatg tacactgtcc tgttgtggag atgtcaacac gttctaaact 1381 tagttgcttg agttggaaca agtattcaaa gaatcatata gctagtagtg attatgaggg 1441 aatagtaacc gtgtgggatg taaatacccg tcagagtctg atggaatatg aagaacatga 1501 aaaacgagca tggagtgttg atttctcacg gacagaaccc tcaatgcttg tatctggtag 1561 tgatgattgc aaggtgaaag tttggtgcac aaagcaggaa gccagtgttc ttaatattga 1621 catgaaagcc aatatatgtt gcgtcaagta taatcctgga tctagcaatt acattgcggt 1681 tggttcagca gaccatcaca tccattatta tgatttaaga aacatcagta gtccactcca 1741 tgtgttcagt gggcacaaga aagctgtctc gtatgtgaaa ttcttgtctg aaaatgaact 1801 tgcttctgcc tctacagaca gcacactaag attgtgggat gtaaaggaga gcttgccgga 1861 aatctcgaaa cctgtaacat ggcatagatt tggttcacag gacatggatg atgcagatga 1921 agacgctgga tcgcacttca tcagtgcggt atgctggaag agtgatagcc ctaccatgct 1981 aactgctaac agtcagggaa cgataaaagt tctcgtcctt gcggcttgat aaaatttaaa 2041 aaaaaaaaaa aattgaagag gagaaaatta gtggtgaaat ctgttgcccc attctttttt 2101 tgttttagta tcagttgaca cttgtaaata tatatatata tataaatata tagtgaaagc 2161 tgtagaggcc acagttctaa atctatatat accgaaagtt tccgcgtgtg aatcaaatat 2221 tcaggtttgt ggctta //