Dbfetch
LOCUS XM_013748985 5132 bp mRNA linear PLN 25-AUG-2015 DEFINITION PREDICTED: Brassica oleracea var. oleracea histone acetyltransferase HAC12-like (LOC106311719), transcript variant X6, mRNA. ACCESSION XM_013748985 VERSION XM_013748985.1 DBLINK BioProject: PRJNA293438 KEYWORDS RefSeq. SOURCE Brassica oleracea var. oleracea ORGANISM Brassica oleracea var. oleracea Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_013617413.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Brassica oleracea Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5132 /organism="Brassica oleracea var. oleracea" /mol_type="mRNA" /variety="oleracea" /cultivar="TO1000" /db_xref="taxon:109376" /chromosome="C8" /geo_loc_name="Canada" /lat_lon="52.1333 N 106.6833 W" /collection_date="31-Aug-2009" gene 1..5132 /gene="LOC106311719" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:106311719" CDS 301..5025 /gene="LOC106311719" /codon_start=1 /product="histone acetyltransferase HAC12-like isoform X2" /protein_id="XP_013604439.1" /db_xref="GeneID:106311719" /translation="MSGQQRSGQSPNQGNNGNSQMQNLAGPGGSVGPSRSTVGPMDHD VLKLRQYMQILVFNVLQQRQPSPADAASKAKYIDVARRLEEGLYKMAISKEDYLNRST LESRITSLIKNRHLNNHNQRHANPSSVGPMIPTPGLSHAGSNPSSMVRPSANATVAGN NNNSTSTAVNTENVRPAGGMHGGNMSNGYHQHSSRNFSLGSGGNMTSMGSQRSTPQMI PTPGFVNNGTNNNSGGFSAEPTVVPQSHQQQQQREETGGQNSHILSNQMTAGRRPGMQ QKAAGVANNSVNGGVGVNEQSVDKGEGYRTQNPDTLGSGNGMMTNAQNINAASFQSVS RANSSQSHQQQQFQQQPNQIQQQQQKFLQQTVQQHKLISNDGSGKPQVSSDMDTDPRM EKNNEALHSQASERLPLSQFQNQYQNPGEDCYADAQNLSVTSQSDICTPLPQNSRQVQ QMLTPQNIGSDSNGMSSQQNVQEDLRQRITGMNEAQPNNLTEGSAVGQNHTSANVSSS HSLQNPIGTMRRTDPKFRNQQKWLLFLLHARTCNPPGGKCTDRNCFTVRKLWSHMNSC VEPQCLYPRCPQTKLLISHYKNCKDLRCPVCMTVKTYRQRQVNPCAQTRLENESSWVN RAVVSNDSLCATAGAVTGSLGCDGTLDNLQPSSKRLKVEPSFQPVAPETENCKSSVVS KTETELSQDAERKDHRQSDANVALKSGKLEGKEEVSDISEAFENVHKPRPSSEPGQHD LSDVSPKQETLKMKQEPNKEDLMKSPEDAPKSGKPKIMGVALTELFTPEQVREHIRGL RQWVGQSKAKAEKNQAMENSMSANSCQLCAVEKLTFEPAPIYCTPCGARIKRNAMYYT VGGGETRHYFCIPCYNESRGDTILAVGTSVPKSRLEKKKNDEETEEAWVQCDKCEAWQ HQICALFNGRRDDGGQAEYTCPHCYITEVEKNERKPLLQNAVLGAKDLPKTILSDHIE QRLFKRLEEERTERARAQGKNYDEVPTAESLVVRVVLSVDKKLEVKSRFLEIFRKDNF PTEFPYKSKVVLLFQKIEGVEVCLFGMYVQEFGSECSSPNERRVYLSYLDSVKYFRPE IKSASGEALRTFVYQEILIGYLEYCKLRGFTSCYIWACPPLKGEDYILYCHPEIQKTP KSDKLREWYLAMLRKAAKEGIVAETTNLYDHFFLQTGECRAKVTAARLPYFDGDYWPG AAEDIIHQMGQEDDGRKGNKKGILKKPITKRALKACGQSDLSGNMSKDLLLMQKLGET IHPMKEDFIMVHLQHCCNHCCALMVTGNRWVCSQCKDFQLCDGCYEAEQRREDRERHP VNQKDKHTLYPVEITGIPEDTKDRDEILESEFFDTRQAFLSLCQGNHYQYDTLRRAKH SSMMVLYHLHNPTAPAFVSTCNACHLDIETGQGWRCEVCPDYDVCNTCYRKEGCINHP HKLTNHPSLADQNAQNKEARQLRVLQLRKMLDLLVHATLCRRATNCQYPNCRKVKALF RHGLGCQRRASGGCVLCRKMWYLLQIHARACKESNCAVPRCGDLKEHLRRLQQQADSR RRAAVMEMMRQRTAEVAGTSAD" ORIGIN 1 ttgtttacta aatcaaattg aaatccctaa aacaaaatta caaaatcccc aaaatcgagc 61 gagcttccga aaaatcccaa ttcgaagaac tccgaccccg aaaaaaatct ccgatttctg 121 aaaaaaattt gtcgacaatt cgttataact tggcctctaa ttttggagtc tctttctggg 181 cttttctggg ctcctacgtg cgacatcggc tcttcacaga cttcattgct ctgttctaat 241 cacgttttgt ctttgtgacc ttgtgagtga caagtttgct tctttgtgtt caaggctcac 301 atgtcgggac aacaacgttc tgggcagtct ccaaaccaag ggaataacgg gaactctcaa 361 atgcagaact tagctggtcc tggtggtagc gtagggcctt cacgtagcac cgttggtcca 421 atggaccatg atgttttaaa actaaggcag tacatgcaaa tccttgtgtt taacgtttta 481 cagcaacggc aaccatctcc ggctgatgct gcatcaaagg caaagtatat agatgttgct 541 agacgcttag aggaggggct gtataagatg gctatctcaa aggaggatta cttgaacagg 601 tcaacccttg agtctcggat tacaagccta ataaaaaaca gacacctgaa taaccacaat 661 cagcgacatg ctaatccttc ttcggttgga ccgatgatac ctactccagg attatcacac 721 gctgggagta atcctagttc gatggttaga ccctctgcta atgctacagt agctggaaac 781 aacaacaaca gcacaagtac agctgtgaat actgaaaacg ttcgacctgc tggtggcatg 841 catggaggta atatgtctaa tggataccac caacattcat cgagaaactt ttctcttggt 901 tctggaggga acatgacatc catgggttct caaagaagta ctccccagat gattcctaca 961 cctgggttcg ttaacaatgg tactaataac aacagtggcg gattttctgc tgagccaaca 1021 gtggtacctc agtctcatca gcagcagcag caaagggagg aaactggtgg tcaaaatagt 1081 cacatcttgt ccaaccaaat gactgctgga cgtagacccg ggatgcaaca aaaggcagct 1141 ggtgtggcca ataactctgt aaatggtggt gttggagtga acgaacaaag tgtagacaaa 1201 ggggaaggtt atagaacaca aaatcctgac acccttggat ctggaaatgg gatgatgaca 1261 aatgctcaga atatcaatgc agcaagtttc cagtctgtgt ccagagctaa ctcttctcag 1321 tcacatcaac agcaacaatt tcagcaacag cctaatcaga ttcaacagca gcagcagaaa 1381 tttctccagc agacggtgca gcagcataaa ttaataagca atgatggctc agggaagcct 1441 caggtgtctt ctgacatgga tacggatcct agaatggaga aaaataatga agcgttgcac 1501 tcccaagcat ctgaacggct cccgctttct cagtttcaga atcaatacca gaaccccgga 1561 gaagactgct atgcagacgc tcagaatctg tcagttacaa gtcagagtga tatatgcact 1621 ccacttcctc aaaatagccg acaggttcag caaatgctga ctccgcagaa tataggttca 1681 gattccaatg gtatgtcaag tcaacagaac gttcaggagg atctccgtca aagaatcacc 1741 gggatgaatg aagctcaacc taataatttg actgaagggt ctgctgttgg tcagaatcat 1801 acttctgcga acgtatccag ttcccatagt ctgcagaatc ctattggaac gatgcgcaga 1861 accgatccca agttccgaaa tcaacagaaa tggctcttgt ttttacttca tgcacggacc 1921 tgcaacccgc caggagggaa gtgcacagac cggaattgct ttactgttcg gaaactatgg 1981 agccacatga acagttgtgt tgaacctcag tgcctatatc ctcggtgtcc tcagacaaag 2041 ttactgatta gccactataa aaactgcaag gatcttcggt gccctgtctg tatgactgtg 2101 aaaacctacc gtcagcgaca agttaatccg tgtgcccaga cccgtctaga aaacgaaagc 2161 agctgggtga acagagctgt agtatcaaat gattcactat gcgctactgc tggagcggtt 2221 actggttccc ttggctgtga tggtacttta gataatttgc aaccttcatc aaaacggttg 2281 aaggtggagc cgtcttttca accagtggcc cctgaaactg aaaattgtaa aagctccgtt 2341 gtttccaaaa cagagacaga actatctcag gatgctgaaa gaaaggatca taggcagagc 2401 gatgcaaatg tggcattgaa gtcagggaag ttggaaggga aagaagaagt ttctgatatt 2461 tctgaagctt ttgaaaatgt tcacaagcct aggccttcca gtgaaccagg tcaacatgat 2521 ttgtctgacg tctcgccaaa gcaagaaacc ttaaaaatga agcaagagcc aaataaagaa 2581 gatttgatga agtctcctga ggatgcacca aaatctggaa aaccaaagat aatgggtgtt 2641 gcattaactg aattgttcac tcccgaacaa gtgagagaac atatccgtgg tcttcgtcag 2701 tgggttggcc agagtaaagc caaagcagaa aagaatcagg ccatggagaa ttcgatgagt 2761 gcgaattcct gccagttatg tgcggtggag aagcttacat tcgagccagc acctatttat 2821 tgtactccgt gtggtgctcg tatcaaaaga aacgcaatgt actataccgt tggaggtggt 2881 gagactcgtc attacttttg tattccctgt tataatgaat cccgaggaga cactatactc 2941 gccgtaggga cttcagtacc aaagtcaagg ctggagaaaa agaaaaacga tgaagagact 3001 gaagaagcgt gggtccagtg tgataaatgc gaggcttggc agcatcaaat atgtgcttta 3061 tttaatgggc ggagggatga tggggggcaa gctgagtaca cctgcccaca ttgctatata 3121 acagaggtgg agaaaaatga gaggaagccc ttacttcaaa atgctgttct tggagcgaaa 3181 gacctgccaa aaacgattct cagtgaccat atagagcagc gtttgtttaa aagactggag 3241 gaggaaagga ctgagagagc cagggctcaa ggaaaaaatt atgatgaggt tccaactgct 3301 gaatcccttg tggttagagt tgttctgtct gttgacaaga agctggaagt caaatctcga 3361 tttcttgaaa tttttaggaa ggataatttc cccacagagt ttccatacaa gtctaaggtg 3421 gttctattgt tccagaagat cgaaggtgta gaagtatgct tgtttgggat gtatgtccaa 3481 gagtttggat ccgaatgctc atctcctaat gagcgccgtg tttatctctc gtatctggat 3541 tctgtgaagt actttagacc tgagattaaa tctgctagtg gagaggctct gcgcactttt 3601 gtataccaag aaattcttat tggttacctg gaatactgca aattgcgtgg tttcacgagc 3661 tgctatatat gggcttgtcc accgctgaag ggtgaggact acatcttata ttgccatcca 3721 gaaattcaga aaacgccaaa gtctgataaa ctacgggagt ggtacttggc aatgttgaga 3781 aaagctgcaa aggaagggat tgtagcggaa accacaaatc tatatgacca ttttttcttg 3841 caaactggtg aatgtagagc taaggttacg gcagctaggc tcccgtattt cgatggtgac 3901 tattggccag gtgcagcaga ggatatcata caccaaatgg gtcaggaaga tgatggtaga 3961 aaaggaaata agaaagggat actcaagaaa cccattacaa aaagggctct aaaagcttgt 4021 ggccagtctg atctgtctgg gaatatgtcc aaagatctgc tgctaatgca aaaacttggt 4081 gagaccattc accccatgaa ggaggacttt atcatggttc acttgcagca ttgttgcaac 4141 cattgctgtg cactgatggt aactggcaat cgttgggtct gcagccaatg caaagatttc 4201 cagttatgtg atgggtgcta tgaggctgaa cagaggcgag aggacagaga aaggcatcct 4261 gttaatcaaa aggataaaca tacactgtat cctgttgaga tcactggtat tcctgaagac 4321 accaaggata gagatgagat actagaaagt gaatttttcg acacaaggca agccttcctg 4381 agtctttgtc aagggaacca ctatcagtac gatacactga ggcgggcaaa acactcttcc 4441 atgatggtgc tttaccatct ccacaatcca actgctcctg cctttgtctc aacgtgtaac 4501 gcatgccacc tcgatatcga aactggccaa ggctggcgct gcgaagtttg ccctgactac 4561 gatgtgtgca acacttgtta ccgtaaagag ggatgtatta atcatcctca caagctgacg 4621 aaccatccat cgctagctga ccaaaatgct cagaacaaag aagctaggca gttgcgagtc 4681 ttgcagctca ggaaaatgct cgatcttctt gtgcatgcga cgctatgccg ccgtgcgacg 4741 aattgtcagt atcctaactg ccgcaaagtg aaggcgctgt tccggcatgg tctaggttgc 4801 cagagacgtg cttcgggagg ctgtgttctg tgcaggaaga tgtggtatct cttgcaaatc 4861 cacgcacggg cctgcaagga atcgaactgt gctgtacctc gatgcggaga cctaaaggaa 4921 catctgagaa gattacaaca gcaagcagat tcacggcgca gagcagctgt catggagatg 4981 atgaggcaga gaactgcaga agtcgctggg acctcggctg attaattttt gtatatactt 5041 aatttcattt aggaacagaa gtggaaatag atagaagaag gtggcgtctc tgagctctac 5101 ttgaagaagt gaataacacc agctagtgaa ga //