Dbfetch
LOCUS XM_013748984 5153 bp mRNA linear PLN 25-AUG-2015 DEFINITION PREDICTED: Brassica oleracea var. oleracea histone acetyltransferase HAC12-like (LOC106311719), transcript variant X5, mRNA. ACCESSION XM_013748984 VERSION XM_013748984.1 DBLINK BioProject: PRJNA293438 KEYWORDS RefSeq. SOURCE Brassica oleracea var. oleracea ORGANISM Brassica oleracea var. oleracea Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_013617413.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Brassica oleracea Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5153 /organism="Brassica oleracea var. oleracea" /mol_type="mRNA" /variety="oleracea" /cultivar="TO1000" /db_xref="taxon:109376" /chromosome="C8" /geo_loc_name="Canada" /lat_lon="52.1333 N 106.6833 W" /collection_date="31-Aug-2009" gene 1..5153 /gene="LOC106311719" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:106311719" CDS 304..5046 /gene="LOC106311719" /codon_start=1 /product="histone acetyltransferase HAC12-like isoform X1" /protein_id="XP_013604438.1" /db_xref="GeneID:106311719" /translation="MNVQAHMSGQQRSGQSPNQGNNGNSQMQNLAGPGGSVGPSRSTV GPMDHDVLKLRQYMQILVFNVLQQRQPSPADAASKAKYIDVARRLEEGLYKMAISKED YLNRSTLESRITSLIKNRHLNNHNQRHANPSSVGPMIPTPGLSHAGSNPSSMVRPSAN ATVAGNNNNSTSTAVNTENVRPAGGMHGGNMSNGYHQHSSRNFSLGSGGNMTSMGSQR STPQMIPTPGFVNNGTNNNSGGFSAEPTVVPQSHQQQQQREETGGQNSHILSNQMTAG RRPGMQQKAAGVANNSVNGGVGVNEQSVDKGEGYRTQNPDTLGSGNGMMTNAQNINAA SFQSVSRANSSQSHQQQQFQQQPNQIQQQQQKFLQQTVQQHKLISNDGSGKPQVSSDM DTDPRMEKNNEALHSQASERLPLSQFQNQYQNPGEDCYADAQNLSVTSQSDICTPLPQ NSRQVQQMLTPQNIGSDSNGMSSQQNVQEDLRQRITGMNEAQPNNLTEGSAVGQNHTS ANVSSSHSLQNPIGTMRRTDPKFRNQQKWLLFLLHARTCNPPGGKCTDRNCFTVRKLW SHMNSCVEPQCLYPRCPQTKLLISHYKNCKDLRCPVCMTVKTYRQRQVNPCAQTRLEN ESSWVNRAVVSNDSLCATAGAVTGSLGCDGTLDNLQPSSKRLKVEPSFQPVAPETENC KSSVVSKTETELSQDAERKDHRQSDANVALKSGKLEGKEEVSDISEAFENVHKPRPSS EPGQHDLSDVSPKQETLKMKQEPNKEDLMKSPEDAPKSGKPKIMGVALTELFTPEQVR EHIRGLRQWVGQSKAKAEKNQAMENSMSANSCQLCAVEKLTFEPAPIYCTPCGARIKR NAMYYTVGGGETRHYFCIPCYNESRGDTILAVGTSVPKSRLEKKKNDEETEEAWVQCD KCEAWQHQICALFNGRRDDGGQAEYTCPHCYITEVEKNERKPLLQNAVLGAKDLPKTI LSDHIEQRLFKRLEEERTERARAQGKNYDEVPTAESLVVRVVLSVDKKLEVKSRFLEI FRKDNFPTEFPYKSKVVLLFQKIEGVEVCLFGMYVQEFGSECSSPNERRVYLSYLDSV KYFRPEIKSASGEALRTFVYQEILIGYLEYCKLRGFTSCYIWACPPLKGEDYILYCHP EIQKTPKSDKLREWYLAMLRKAAKEGIVAETTNLYDHFFLQTGECRAKVTAARLPYFD GDYWPGAAEDIIHQMGQEDDGRKGNKKGILKKPITKRALKACGQSDLSGNMSKDLLLM QKLGETIHPMKEDFIMVHLQHCCNHCCALMVTGNRWVCSQCKDFQLCDGCYEAEQRRE DRERHPVNQKDKHTLYPVEITGIPEDTKDRDEILESEFFDTRQAFLSLCQGNHYQYDT LRRAKHSSMMVLYHLHNPTAPAFVSTCNACHLDIETGQGWRCEVCPDYDVCNTCYRKE GCINHPHKLTNHPSLADQNAQNKEARQLRVLQLRKMLDLLVHATLCRRATNCQYPNCR KVKALFRHGLGCQRRASGGCVLCRKMWYLLQIHARACKESNCAVPRCGDLKEHLRRLQ QQADSRRRAAVMEMMRQRTAEVAGTSAD" ORIGIN 1 ttgtttacta aatcaaattg aaatccctaa aacaaaatta caaaatcccc aaaatcgagc 61 gagcttccga aaaatcccaa ttcgaagaac tccgaccccg aaaaaaatct ccgatttctg 121 aaaaaaattt gtcgacaatt cgttataact tggcctctaa ttttggagtc tctttctggg 181 cttttctggg ctcctacgtg cgacatcggc tcttcacaga cttcattgct ctgttctaat 241 cacgttttgt ctttgtgacc ttgaaagaat taggacaagg cgaggaaagt ttaagaaaat 301 aacatgaatg ttcaggctca catgtcggga caacaacgtt ctgggcagtc tccaaaccaa 361 gggaataacg ggaactctca aatgcagaac ttagctggtc ctggtggtag cgtagggcct 421 tcacgtagca ccgttggtcc aatggaccat gatgttttaa aactaaggca gtacatgcaa 481 atccttgtgt ttaacgtttt acagcaacgg caaccatctc cggctgatgc tgcatcaaag 541 gcaaagtata tagatgttgc tagacgctta gaggaggggc tgtataagat ggctatctca 601 aaggaggatt acttgaacag gtcaaccctt gagtctcgga ttacaagcct aataaaaaac 661 agacacctga ataaccacaa tcagcgacat gctaatcctt cttcggttgg accgatgata 721 cctactccag gattatcaca cgctgggagt aatcctagtt cgatggttag accctctgct 781 aatgctacag tagctggaaa caacaacaac agcacaagta cagctgtgaa tactgaaaac 841 gttcgacctg ctggtggcat gcatggaggt aatatgtcta atggatacca ccaacattca 901 tcgagaaact tttctcttgg ttctggaggg aacatgacat ccatgggttc tcaaagaagt 961 actccccaga tgattcctac acctgggttc gttaacaatg gtactaataa caacagtggc 1021 ggattttctg ctgagccaac agtggtacct cagtctcatc agcagcagca gcaaagggag 1081 gaaactggtg gtcaaaatag tcacatcttg tccaaccaaa tgactgctgg acgtagaccc 1141 gggatgcaac aaaaggcagc tggtgtggcc aataactctg taaatggtgg tgttggagtg 1201 aacgaacaaa gtgtagacaa aggggaaggt tatagaacac aaaatcctga cacccttgga 1261 tctggaaatg ggatgatgac aaatgctcag aatatcaatg cagcaagttt ccagtctgtg 1321 tccagagcta actcttctca gtcacatcaa cagcaacaat ttcagcaaca gcctaatcag 1381 attcaacagc agcagcagaa atttctccag cagacggtgc agcagcataa attaataagc 1441 aatgatggct cagggaagcc tcaggtgtct tctgacatgg atacggatcc tagaatggag 1501 aaaaataatg aagcgttgca ctcccaagca tctgaacggc tcccgctttc tcagtttcag 1561 aatcaatacc agaaccccgg agaagactgc tatgcagacg ctcagaatct gtcagttaca 1621 agtcagagtg atatatgcac tccacttcct caaaatagcc gacaggttca gcaaatgctg 1681 actccgcaga atataggttc agattccaat ggtatgtcaa gtcaacagaa cgttcaggag 1741 gatctccgtc aaagaatcac cgggatgaat gaagctcaac ctaataattt gactgaaggg 1801 tctgctgttg gtcagaatca tacttctgcg aacgtatcca gttcccatag tctgcagaat 1861 cctattggaa cgatgcgcag aaccgatccc aagttccgaa atcaacagaa atggctcttg 1921 tttttacttc atgcacggac ctgcaacccg ccaggaggga agtgcacaga ccggaattgc 1981 tttactgttc ggaaactatg gagccacatg aacagttgtg ttgaacctca gtgcctatat 2041 cctcggtgtc ctcagacaaa gttactgatt agccactata aaaactgcaa ggatcttcgg 2101 tgccctgtct gtatgactgt gaaaacctac cgtcagcgac aagttaatcc gtgtgcccag 2161 acccgtctag aaaacgaaag cagctgggtg aacagagctg tagtatcaaa tgattcacta 2221 tgcgctactg ctggagcggt tactggttcc cttggctgtg atggtacttt agataatttg 2281 caaccttcat caaaacggtt gaaggtggag ccgtcttttc aaccagtggc ccctgaaact 2341 gaaaattgta aaagctccgt tgtttccaaa acagagacag aactatctca ggatgctgaa 2401 agaaaggatc ataggcagag cgatgcaaat gtggcattga agtcagggaa gttggaaggg 2461 aaagaagaag tttctgatat ttctgaagct tttgaaaatg ttcacaagcc taggccttcc 2521 agtgaaccag gtcaacatga tttgtctgac gtctcgccaa agcaagaaac cttaaaaatg 2581 aagcaagagc caaataaaga agatttgatg aagtctcctg aggatgcacc aaaatctgga 2641 aaaccaaaga taatgggtgt tgcattaact gaattgttca ctcccgaaca agtgagagaa 2701 catatccgtg gtcttcgtca gtgggttggc cagagtaaag ccaaagcaga aaagaatcag 2761 gccatggaga attcgatgag tgcgaattcc tgccagttat gtgcggtgga gaagcttaca 2821 ttcgagccag cacctattta ttgtactccg tgtggtgctc gtatcaaaag aaacgcaatg 2881 tactataccg ttggaggtgg tgagactcgt cattactttt gtattccctg ttataatgaa 2941 tcccgaggag acactatact cgccgtaggg acttcagtac caaagtcaag gctggagaaa 3001 aagaaaaacg atgaagagac tgaagaagcg tgggtccagt gtgataaatg cgaggcttgg 3061 cagcatcaaa tatgtgcttt atttaatggg cggagggatg atggggggca agctgagtac 3121 acctgcccac attgctatat aacagaggtg gagaaaaatg agaggaagcc cttacttcaa 3181 aatgctgttc ttggagcgaa agacctgcca aaaacgattc tcagtgacca tatagagcag 3241 cgtttgttta aaagactgga ggaggaaagg actgagagag ccagggctca aggaaaaaat 3301 tatgatgagg ttccaactgc tgaatccctt gtggttagag ttgttctgtc tgttgacaag 3361 aagctggaag tcaaatctcg atttcttgaa atttttagga aggataattt ccccacagag 3421 tttccataca agtctaaggt ggttctattg ttccagaaga tcgaaggtgt agaagtatgc 3481 ttgtttggga tgtatgtcca agagtttgga tccgaatgct catctcctaa tgagcgccgt 3541 gtttatctct cgtatctgga ttctgtgaag tactttagac ctgagattaa atctgctagt 3601 ggagaggctc tgcgcacttt tgtataccaa gaaattctta ttggttacct ggaatactgc 3661 aaattgcgtg gtttcacgag ctgctatata tgggcttgtc caccgctgaa gggtgaggac 3721 tacatcttat attgccatcc agaaattcag aaaacgccaa agtctgataa actacgggag 3781 tggtacttgg caatgttgag aaaagctgca aaggaaggga ttgtagcgga aaccacaaat 3841 ctatatgacc attttttctt gcaaactggt gaatgtagag ctaaggttac ggcagctagg 3901 ctcccgtatt tcgatggtga ctattggcca ggtgcagcag aggatatcat acaccaaatg 3961 ggtcaggaag atgatggtag aaaaggaaat aagaaaggga tactcaagaa acccattaca 4021 aaaagggctc taaaagcttg tggccagtct gatctgtctg ggaatatgtc caaagatctg 4081 ctgctaatgc aaaaacttgg tgagaccatt caccccatga aggaggactt tatcatggtt 4141 cacttgcagc attgttgcaa ccattgctgt gcactgatgg taactggcaa tcgttgggtc 4201 tgcagccaat gcaaagattt ccagttatgt gatgggtgct atgaggctga acagaggcga 4261 gaggacagag aaaggcatcc tgttaatcaa aaggataaac atacactgta tcctgttgag 4321 atcactggta ttcctgaaga caccaaggat agagatgaga tactagaaag tgaatttttc 4381 gacacaaggc aagccttcct gagtctttgt caagggaacc actatcagta cgatacactg 4441 aggcgggcaa aacactcttc catgatggtg ctttaccatc tccacaatcc aactgctcct 4501 gcctttgtct caacgtgtaa cgcatgccac ctcgatatcg aaactggcca aggctggcgc 4561 tgcgaagttt gccctgacta cgatgtgtgc aacacttgtt accgtaaaga gggatgtatt 4621 aatcatcctc acaagctgac gaaccatcca tcgctagctg accaaaatgc tcagaacaaa 4681 gaagctaggc agttgcgagt cttgcagctc aggaaaatgc tcgatcttct tgtgcatgcg 4741 acgctatgcc gccgtgcgac gaattgtcag tatcctaact gccgcaaagt gaaggcgctg 4801 ttccggcatg gtctaggttg ccagagacgt gcttcgggag gctgtgttct gtgcaggaag 4861 atgtggtatc tcttgcaaat ccacgcacgg gcctgcaagg aatcgaactg tgctgtacct 4921 cgatgcggag acctaaagga acatctgaga agattacaac agcaagcaga ttcacggcgc 4981 agagcagctg tcatggagat gatgaggcag agaactgcag aagtcgctgg gacctcggct 5041 gattaatttt tgtatatact taatttcatt taggaacaga agtggaaata gatagaagaa 5101 ggtggcgtct ctgagctcta cttgaagaag tgaataacac cagctagtga aga //