Dbfetch
LOCUS XM_013748982 5258 bp mRNA linear PLN 25-AUG-2015 DEFINITION PREDICTED: Brassica oleracea var. oleracea histone acetyltransferase HAC12-like (LOC106311719), transcript variant X3, mRNA. ACCESSION XM_013748982 VERSION XM_013748982.1 DBLINK BioProject: PRJNA293438 KEYWORDS RefSeq. SOURCE Brassica oleracea var. oleracea ORGANISM Brassica oleracea var. oleracea Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_013617413.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Brassica oleracea Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5258 /organism="Brassica oleracea var. oleracea" /mol_type="mRNA" /variety="oleracea" /cultivar="TO1000" /db_xref="taxon:109376" /chromosome="C8" /geo_loc_name="Canada" /lat_lon="52.1333 N 106.6833 W" /collection_date="31-Aug-2009" gene 1..5258 /gene="LOC106311719" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:106311719" CDS 409..5151 /gene="LOC106311719" /codon_start=1 /product="histone acetyltransferase HAC12-like isoform X1" /protein_id="XP_013604436.1" /db_xref="GeneID:106311719" /translation="MNVQAHMSGQQRSGQSPNQGNNGNSQMQNLAGPGGSVGPSRSTV GPMDHDVLKLRQYMQILVFNVLQQRQPSPADAASKAKYIDVARRLEEGLYKMAISKED YLNRSTLESRITSLIKNRHLNNHNQRHANPSSVGPMIPTPGLSHAGSNPSSMVRPSAN ATVAGNNNNSTSTAVNTENVRPAGGMHGGNMSNGYHQHSSRNFSLGSGGNMTSMGSQR STPQMIPTPGFVNNGTNNNSGGFSAEPTVVPQSHQQQQQREETGGQNSHILSNQMTAG RRPGMQQKAAGVANNSVNGGVGVNEQSVDKGEGYRTQNPDTLGSGNGMMTNAQNINAA SFQSVSRANSSQSHQQQQFQQQPNQIQQQQQKFLQQTVQQHKLISNDGSGKPQVSSDM DTDPRMEKNNEALHSQASERLPLSQFQNQYQNPGEDCYADAQNLSVTSQSDICTPLPQ NSRQVQQMLTPQNIGSDSNGMSSQQNVQEDLRQRITGMNEAQPNNLTEGSAVGQNHTS ANVSSSHSLQNPIGTMRRTDPKFRNQQKWLLFLLHARTCNPPGGKCTDRNCFTVRKLW SHMNSCVEPQCLYPRCPQTKLLISHYKNCKDLRCPVCMTVKTYRQRQVNPCAQTRLEN ESSWVNRAVVSNDSLCATAGAVTGSLGCDGTLDNLQPSSKRLKVEPSFQPVAPETENC KSSVVSKTETELSQDAERKDHRQSDANVALKSGKLEGKEEVSDISEAFENVHKPRPSS EPGQHDLSDVSPKQETLKMKQEPNKEDLMKSPEDAPKSGKPKIMGVALTELFTPEQVR EHIRGLRQWVGQSKAKAEKNQAMENSMSANSCQLCAVEKLTFEPAPIYCTPCGARIKR NAMYYTVGGGETRHYFCIPCYNESRGDTILAVGTSVPKSRLEKKKNDEETEEAWVQCD KCEAWQHQICALFNGRRDDGGQAEYTCPHCYITEVEKNERKPLLQNAVLGAKDLPKTI LSDHIEQRLFKRLEEERTERARAQGKNYDEVPTAESLVVRVVLSVDKKLEVKSRFLEI FRKDNFPTEFPYKSKVVLLFQKIEGVEVCLFGMYVQEFGSECSSPNERRVYLSYLDSV KYFRPEIKSASGEALRTFVYQEILIGYLEYCKLRGFTSCYIWACPPLKGEDYILYCHP EIQKTPKSDKLREWYLAMLRKAAKEGIVAETTNLYDHFFLQTGECRAKVTAARLPYFD GDYWPGAAEDIIHQMGQEDDGRKGNKKGILKKPITKRALKACGQSDLSGNMSKDLLLM QKLGETIHPMKEDFIMVHLQHCCNHCCALMVTGNRWVCSQCKDFQLCDGCYEAEQRRE DRERHPVNQKDKHTLYPVEITGIPEDTKDRDEILESEFFDTRQAFLSLCQGNHYQYDT LRRAKHSSMMVLYHLHNPTAPAFVSTCNACHLDIETGQGWRCEVCPDYDVCNTCYRKE GCINHPHKLTNHPSLADQNAQNKEARQLRVLQLRKMLDLLVHATLCRRATNCQYPNCR KVKALFRHGLGCQRRASGGCVLCRKMWYLLQIHARACKESNCAVPRCGDLKEHLRRLQ QQADSRRRAAVMEMMRQRTAEVAGTSAD" ORIGIN 1 ttgtttacta aatcaaattg aaatccctaa aacaaaatta caaaatcccc aaaatcgagc 61 gagcttccga aaaatcccaa ttcgaagaac tccgaccccg aaaaaaatct ccgatttctg 121 aaaaaaattt gtcgacaatt cgttataact tggcctctaa ttttggagtc tctttctggg 181 cttttctggg ctcctacgtg cgacatcggc tcttcacaga cttcattgct ctgttctaat 241 cacgttttgt ctttgtgacc ttgtgagtga caagtttgct tctttgtgtt caagattgtt 301 ttgctaggtt gtgttctgtg ttaagagctg ctgtactgag ataatctgaa gaaatcatta 361 atagcaggaa agaattagga caaggcgagg aaagtttaag aaaataacat gaatgttcag 421 gctcacatgt cgggacaaca acgttctggg cagtctccaa accaagggaa taacgggaac 481 tctcaaatgc agaacttagc tggtcctggt ggtagcgtag ggccttcacg tagcaccgtt 541 ggtccaatgg accatgatgt tttaaaacta aggcagtaca tgcaaatcct tgtgtttaac 601 gttttacagc aacggcaacc atctccggct gatgctgcat caaaggcaaa gtatatagat 661 gttgctagac gcttagagga ggggctgtat aagatggcta tctcaaagga ggattacttg 721 aacaggtcaa cccttgagtc tcggattaca agcctaataa aaaacagaca cctgaataac 781 cacaatcagc gacatgctaa tccttcttcg gttggaccga tgatacctac tccaggatta 841 tcacacgctg ggagtaatcc tagttcgatg gttagaccct ctgctaatgc tacagtagct 901 ggaaacaaca acaacagcac aagtacagct gtgaatactg aaaacgttcg acctgctggt 961 ggcatgcatg gaggtaatat gtctaatgga taccaccaac attcatcgag aaacttttct 1021 cttggttctg gagggaacat gacatccatg ggttctcaaa gaagtactcc ccagatgatt 1081 cctacacctg ggttcgttaa caatggtact aataacaaca gtggcggatt ttctgctgag 1141 ccaacagtgg tacctcagtc tcatcagcag cagcagcaaa gggaggaaac tggtggtcaa 1201 aatagtcaca tcttgtccaa ccaaatgact gctggacgta gacccgggat gcaacaaaag 1261 gcagctggtg tggccaataa ctctgtaaat ggtggtgttg gagtgaacga acaaagtgta 1321 gacaaagggg aaggttatag aacacaaaat cctgacaccc ttggatctgg aaatgggatg 1381 atgacaaatg ctcagaatat caatgcagca agtttccagt ctgtgtccag agctaactct 1441 tctcagtcac atcaacagca acaatttcag caacagccta atcagattca acagcagcag 1501 cagaaatttc tccagcagac ggtgcagcag cataaattaa taagcaatga tggctcaggg 1561 aagcctcagg tgtcttctga catggatacg gatcctagaa tggagaaaaa taatgaagcg 1621 ttgcactccc aagcatctga acggctcccg ctttctcagt ttcagaatca ataccagaac 1681 cccggagaag actgctatgc agacgctcag aatctgtcag ttacaagtca gagtgatata 1741 tgcactccac ttcctcaaaa tagccgacag gttcagcaaa tgctgactcc gcagaatata 1801 ggttcagatt ccaatggtat gtcaagtcaa cagaacgttc aggaggatct ccgtcaaaga 1861 atcaccggga tgaatgaagc tcaacctaat aatttgactg aagggtctgc tgttggtcag 1921 aatcatactt ctgcgaacgt atccagttcc catagtctgc agaatcctat tggaacgatg 1981 cgcagaaccg atcccaagtt ccgaaatcaa cagaaatggc tcttgttttt acttcatgca 2041 cggacctgca acccgccagg agggaagtgc acagaccgga attgctttac tgttcggaaa 2101 ctatggagcc acatgaacag ttgtgttgaa cctcagtgcc tatatcctcg gtgtcctcag 2161 acaaagttac tgattagcca ctataaaaac tgcaaggatc ttcggtgccc tgtctgtatg 2221 actgtgaaaa cctaccgtca gcgacaagtt aatccgtgtg cccagacccg tctagaaaac 2281 gaaagcagct gggtgaacag agctgtagta tcaaatgatt cactatgcgc tactgctgga 2341 gcggttactg gttcccttgg ctgtgatggt actttagata atttgcaacc ttcatcaaaa 2401 cggttgaagg tggagccgtc ttttcaacca gtggcccctg aaactgaaaa ttgtaaaagc 2461 tccgttgttt ccaaaacaga gacagaacta tctcaggatg ctgaaagaaa ggatcatagg 2521 cagagcgatg caaatgtggc attgaagtca gggaagttgg aagggaaaga agaagtttct 2581 gatatttctg aagcttttga aaatgttcac aagcctaggc cttccagtga accaggtcaa 2641 catgatttgt ctgacgtctc gccaaagcaa gaaaccttaa aaatgaagca agagccaaat 2701 aaagaagatt tgatgaagtc tcctgaggat gcaccaaaat ctggaaaacc aaagataatg 2761 ggtgttgcat taactgaatt gttcactccc gaacaagtga gagaacatat ccgtggtctt 2821 cgtcagtggg ttggccagag taaagccaaa gcagaaaaga atcaggccat ggagaattcg 2881 atgagtgcga attcctgcca gttatgtgcg gtggagaagc ttacattcga gccagcacct 2941 atttattgta ctccgtgtgg tgctcgtatc aaaagaaacg caatgtacta taccgttgga 3001 ggtggtgaga ctcgtcatta cttttgtatt ccctgttata atgaatcccg aggagacact 3061 atactcgccg tagggacttc agtaccaaag tcaaggctgg agaaaaagaa aaacgatgaa 3121 gagactgaag aagcgtgggt ccagtgtgat aaatgcgagg cttggcagca tcaaatatgt 3181 gctttattta atgggcggag ggatgatggg gggcaagctg agtacacctg cccacattgc 3241 tatataacag aggtggagaa aaatgagagg aagcccttac ttcaaaatgc tgttcttgga 3301 gcgaaagacc tgccaaaaac gattctcagt gaccatatag agcagcgttt gtttaaaaga 3361 ctggaggagg aaaggactga gagagccagg gctcaaggaa aaaattatga tgaggttcca 3421 actgctgaat cccttgtggt tagagttgtt ctgtctgttg acaagaagct ggaagtcaaa 3481 tctcgatttc ttgaaatttt taggaaggat aatttcccca cagagtttcc atacaagtct 3541 aaggtggttc tattgttcca gaagatcgaa ggtgtagaag tatgcttgtt tgggatgtat 3601 gtccaagagt ttggatccga atgctcatct cctaatgagc gccgtgttta tctctcgtat 3661 ctggattctg tgaagtactt tagacctgag attaaatctg ctagtggaga ggctctgcgc 3721 acttttgtat accaagaaat tcttattggt tacctggaat actgcaaatt gcgtggtttc 3781 acgagctgct atatatgggc ttgtccaccg ctgaagggtg aggactacat cttatattgc 3841 catccagaaa ttcagaaaac gccaaagtct gataaactac gggagtggta cttggcaatg 3901 ttgagaaaag ctgcaaagga agggattgta gcggaaacca caaatctata tgaccatttt 3961 ttcttgcaaa ctggtgaatg tagagctaag gttacggcag ctaggctccc gtatttcgat 4021 ggtgactatt ggccaggtgc agcagaggat atcatacacc aaatgggtca ggaagatgat 4081 ggtagaaaag gaaataagaa agggatactc aagaaaccca ttacaaaaag ggctctaaaa 4141 gcttgtggcc agtctgatct gtctgggaat atgtccaaag atctgctgct aatgcaaaaa 4201 cttggtgaga ccattcaccc catgaaggag gactttatca tggttcactt gcagcattgt 4261 tgcaaccatt gctgtgcact gatggtaact ggcaatcgtt gggtctgcag ccaatgcaaa 4321 gatttccagt tatgtgatgg gtgctatgag gctgaacaga ggcgagagga cagagaaagg 4381 catcctgtta atcaaaagga taaacataca ctgtatcctg ttgagatcac tggtattcct 4441 gaagacacca aggatagaga tgagatacta gaaagtgaat ttttcgacac aaggcaagcc 4501 ttcctgagtc tttgtcaagg gaaccactat cagtacgata cactgaggcg ggcaaaacac 4561 tcttccatga tggtgcttta ccatctccac aatccaactg ctcctgcctt tgtctcaacg 4621 tgtaacgcat gccacctcga tatcgaaact ggccaaggct ggcgctgcga agtttgccct 4681 gactacgatg tgtgcaacac ttgttaccgt aaagagggat gtattaatca tcctcacaag 4741 ctgacgaacc atccatcgct agctgaccaa aatgctcaga acaaagaagc taggcagttg 4801 cgagtcttgc agctcaggaa aatgctcgat cttcttgtgc atgcgacgct atgccgccgt 4861 gcgacgaatt gtcagtatcc taactgccgc aaagtgaagg cgctgttccg gcatggtcta 4921 ggttgccaga gacgtgcttc gggaggctgt gttctgtgca ggaagatgtg gtatctcttg 4981 caaatccacg cacgggcctg caaggaatcg aactgtgctg tacctcgatg cggagaccta 5041 aaggaacatc tgagaagatt acaacagcaa gcagattcac ggcgcagagc agctgtcatg 5101 gagatgatga ggcagagaac tgcagaagtc gctgggacct cggctgatta atttttgtat 5161 atacttaatt tcatttagga acagaagtgg aaatagatag aagaaggtgg cgtctctgag 5221 ctctacttga agaagtgaat aacaccagct agtgaaga // Unexpected Error when closing connection to refseq from NCBI E-utilities. Non-zero exit status returned (255). STDERR: "http status: 429 Too Many Requests Too Many Requests at /nfs/public/rw/es/projects/jdbfetch/util/ncbi_refseq_fetch.pl line 124."