Dbfetch
LOCUS XM_013748979 5245 bp mRNA linear PLN 25-AUG-2015 DEFINITION PREDICTED: Brassica oleracea var. oleracea histone acetyltransferase HAC12-like (LOC106311719), transcript variant X1, mRNA. ACCESSION XM_013748979 VERSION XM_013748979.1 DBLINK BioProject: PRJNA293438 KEYWORDS RefSeq. SOURCE Brassica oleracea var. oleracea ORGANISM Brassica oleracea var. oleracea Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_013617413.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Brassica oleracea Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5245 /organism="Brassica oleracea var. oleracea" /mol_type="mRNA" /variety="oleracea" /cultivar="TO1000" /db_xref="taxon:109376" /chromosome="C8" /geo_loc_name="Canada" /lat_lon="52.1333 N 106.6833 W" /collection_date="31-Aug-2009" gene 1..5245 /gene="LOC106311719" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns" /db_xref="GeneID:106311719" CDS 396..5138 /gene="LOC106311719" /codon_start=1 /product="histone acetyltransferase HAC12-like isoform X1" /protein_id="XP_013604433.1" /db_xref="GeneID:106311719" /translation="MNVQAHMSGQQRSGQSPNQGNNGNSQMQNLAGPGGSVGPSRSTV GPMDHDVLKLRQYMQILVFNVLQQRQPSPADAASKAKYIDVARRLEEGLYKMAISKED YLNRSTLESRITSLIKNRHLNNHNQRHANPSSVGPMIPTPGLSHAGSNPSSMVRPSAN ATVAGNNNNSTSTAVNTENVRPAGGMHGGNMSNGYHQHSSRNFSLGSGGNMTSMGSQR STPQMIPTPGFVNNGTNNNSGGFSAEPTVVPQSHQQQQQREETGGQNSHILSNQMTAG RRPGMQQKAAGVANNSVNGGVGVNEQSVDKGEGYRTQNPDTLGSGNGMMTNAQNINAA SFQSVSRANSSQSHQQQQFQQQPNQIQQQQQKFLQQTVQQHKLISNDGSGKPQVSSDM DTDPRMEKNNEALHSQASERLPLSQFQNQYQNPGEDCYADAQNLSVTSQSDICTPLPQ NSRQVQQMLTPQNIGSDSNGMSSQQNVQEDLRQRITGMNEAQPNNLTEGSAVGQNHTS ANVSSSHSLQNPIGTMRRTDPKFRNQQKWLLFLLHARTCNPPGGKCTDRNCFTVRKLW SHMNSCVEPQCLYPRCPQTKLLISHYKNCKDLRCPVCMTVKTYRQRQVNPCAQTRLEN ESSWVNRAVVSNDSLCATAGAVTGSLGCDGTLDNLQPSSKRLKVEPSFQPVAPETENC KSSVVSKTETELSQDAERKDHRQSDANVALKSGKLEGKEEVSDISEAFENVHKPRPSS EPGQHDLSDVSPKQETLKMKQEPNKEDLMKSPEDAPKSGKPKIMGVALTELFTPEQVR EHIRGLRQWVGQSKAKAEKNQAMENSMSANSCQLCAVEKLTFEPAPIYCTPCGARIKR NAMYYTVGGGETRHYFCIPCYNESRGDTILAVGTSVPKSRLEKKKNDEETEEAWVQCD KCEAWQHQICALFNGRRDDGGQAEYTCPHCYITEVEKNERKPLLQNAVLGAKDLPKTI LSDHIEQRLFKRLEEERTERARAQGKNYDEVPTAESLVVRVVLSVDKKLEVKSRFLEI FRKDNFPTEFPYKSKVVLLFQKIEGVEVCLFGMYVQEFGSECSSPNERRVYLSYLDSV KYFRPEIKSASGEALRTFVYQEILIGYLEYCKLRGFTSCYIWACPPLKGEDYILYCHP EIQKTPKSDKLREWYLAMLRKAAKEGIVAETTNLYDHFFLQTGECRAKVTAARLPYFD GDYWPGAAEDIIHQMGQEDDGRKGNKKGILKKPITKRALKACGQSDLSGNMSKDLLLM QKLGETIHPMKEDFIMVHLQHCCNHCCALMVTGNRWVCSQCKDFQLCDGCYEAEQRRE DRERHPVNQKDKHTLYPVEITGIPEDTKDRDEILESEFFDTRQAFLSLCQGNHYQYDT LRRAKHSSMMVLYHLHNPTAPAFVSTCNACHLDIETGQGWRCEVCPDYDVCNTCYRKE GCINHPHKLTNHPSLADQNAQNKEARQLRVLQLRKMLDLLVHATLCRRATNCQYPNCR KVKALFRHGLGCQRRASGGCVLCRKMWYLLQIHARACKESNCAVPRCGDLKEHLRRLQ QQADSRRRAAVMEMMRQRTAEVAGTSAD" ORIGIN 1 ttgtttacta aatcaaattg aaatccctaa aacaaaatta caaaatcccc aaaatcgagc 61 gagcttccga aaaatcccaa ttcgaagaac tccgaccccg aaaaaaatct ccgatttctg 121 aaaaaaattt gtcgacaatt cgttataact tggcctctaa ttttggagtc tctttctggg 181 cttttctggg ctcctacgtg cgacatcggc tcttcacaga cttcattgct ctgttctaat 241 cacgttttgt ctttgtgacc ttgtgagtga caagtttgct tctttgtgtt caaggttgtg 301 ttctgtgtta agagctgctg tactgagata atctgaagaa atcattaata gcaggaaaga 361 attaggacaa ggcgaggaaa gtttaagaaa ataacatgaa tgttcaggct cacatgtcgg 421 gacaacaacg ttctgggcag tctccaaacc aagggaataa cgggaactct caaatgcaga 481 acttagctgg tcctggtggt agcgtagggc cttcacgtag caccgttggt ccaatggacc 541 atgatgtttt aaaactaagg cagtacatgc aaatccttgt gtttaacgtt ttacagcaac 601 ggcaaccatc tccggctgat gctgcatcaa aggcaaagta tatagatgtt gctagacgct 661 tagaggaggg gctgtataag atggctatct caaaggagga ttacttgaac aggtcaaccc 721 ttgagtctcg gattacaagc ctaataaaaa acagacacct gaataaccac aatcagcgac 781 atgctaatcc ttcttcggtt ggaccgatga tacctactcc aggattatca cacgctggga 841 gtaatcctag ttcgatggtt agaccctctg ctaatgctac agtagctgga aacaacaaca 901 acagcacaag tacagctgtg aatactgaaa acgttcgacc tgctggtggc atgcatggag 961 gtaatatgtc taatggatac caccaacatt catcgagaaa cttttctctt ggttctggag 1021 ggaacatgac atccatgggt tctcaaagaa gtactcccca gatgattcct acacctgggt 1081 tcgttaacaa tggtactaat aacaacagtg gcggattttc tgctgagcca acagtggtac 1141 ctcagtctca tcagcagcag cagcaaaggg aggaaactgg tggtcaaaat agtcacatct 1201 tgtccaacca aatgactgct ggacgtagac ccgggatgca acaaaaggca gctggtgtgg 1261 ccaataactc tgtaaatggt ggtgttggag tgaacgaaca aagtgtagac aaaggggaag 1321 gttatagaac acaaaatcct gacacccttg gatctggaaa tgggatgatg acaaatgctc 1381 agaatatcaa tgcagcaagt ttccagtctg tgtccagagc taactcttct cagtcacatc 1441 aacagcaaca atttcagcaa cagcctaatc agattcaaca gcagcagcag aaatttctcc 1501 agcagacggt gcagcagcat aaattaataa gcaatgatgg ctcagggaag cctcaggtgt 1561 cttctgacat ggatacggat cctagaatgg agaaaaataa tgaagcgttg cactcccaag 1621 catctgaacg gctcccgctt tctcagtttc agaatcaata ccagaacccc ggagaagact 1681 gctatgcaga cgctcagaat ctgtcagtta caagtcagag tgatatatgc actccacttc 1741 ctcaaaatag ccgacaggtt cagcaaatgc tgactccgca gaatataggt tcagattcca 1801 atggtatgtc aagtcaacag aacgttcagg aggatctccg tcaaagaatc accgggatga 1861 atgaagctca acctaataat ttgactgaag ggtctgctgt tggtcagaat catacttctg 1921 cgaacgtatc cagttcccat agtctgcaga atcctattgg aacgatgcgc agaaccgatc 1981 ccaagttccg aaatcaacag aaatggctct tgtttttact tcatgcacgg acctgcaacc 2041 cgccaggagg gaagtgcaca gaccggaatt gctttactgt tcggaaacta tggagccaca 2101 tgaacagttg tgttgaacct cagtgcctat atcctcggtg tcctcagaca aagttactga 2161 ttagccacta taaaaactgc aaggatcttc ggtgccctgt ctgtatgact gtgaaaacct 2221 accgtcagcg acaagttaat ccgtgtgccc agacccgtct agaaaacgaa agcagctggg 2281 tgaacagagc tgtagtatca aatgattcac tatgcgctac tgctggagcg gttactggtt 2341 cccttggctg tgatggtact ttagataatt tgcaaccttc atcaaaacgg ttgaaggtgg 2401 agccgtcttt tcaaccagtg gcccctgaaa ctgaaaattg taaaagctcc gttgtttcca 2461 aaacagagac agaactatct caggatgctg aaagaaagga tcataggcag agcgatgcaa 2521 atgtggcatt gaagtcaggg aagttggaag ggaaagaaga agtttctgat atttctgaag 2581 cttttgaaaa tgttcacaag cctaggcctt ccagtgaacc aggtcaacat gatttgtctg 2641 acgtctcgcc aaagcaagaa accttaaaaa tgaagcaaga gccaaataaa gaagatttga 2701 tgaagtctcc tgaggatgca ccaaaatctg gaaaaccaaa gataatgggt gttgcattaa 2761 ctgaattgtt cactcccgaa caagtgagag aacatatccg tggtcttcgt cagtgggttg 2821 gccagagtaa agccaaagca gaaaagaatc aggccatgga gaattcgatg agtgcgaatt 2881 cctgccagtt atgtgcggtg gagaagctta cattcgagcc agcacctatt tattgtactc 2941 cgtgtggtgc tcgtatcaaa agaaacgcaa tgtactatac cgttggaggt ggtgagactc 3001 gtcattactt ttgtattccc tgttataatg aatcccgagg agacactata ctcgccgtag 3061 ggacttcagt accaaagtca aggctggaga aaaagaaaaa cgatgaagag actgaagaag 3121 cgtgggtcca gtgtgataaa tgcgaggctt ggcagcatca aatatgtgct ttatttaatg 3181 ggcggaggga tgatgggggg caagctgagt acacctgccc acattgctat ataacagagg 3241 tggagaaaaa tgagaggaag cccttacttc aaaatgctgt tcttggagcg aaagacctgc 3301 caaaaacgat tctcagtgac catatagagc agcgtttgtt taaaagactg gaggaggaaa 3361 ggactgagag agccagggct caaggaaaaa attatgatga ggttccaact gctgaatccc 3421 ttgtggttag agttgttctg tctgttgaca agaagctgga agtcaaatct cgatttcttg 3481 aaatttttag gaaggataat ttccccacag agtttccata caagtctaag gtggttctat 3541 tgttccagaa gatcgaaggt gtagaagtat gcttgtttgg gatgtatgtc caagagtttg 3601 gatccgaatg ctcatctcct aatgagcgcc gtgtttatct ctcgtatctg gattctgtga 3661 agtactttag acctgagatt aaatctgcta gtggagaggc tctgcgcact tttgtatacc 3721 aagaaattct tattggttac ctggaatact gcaaattgcg tggtttcacg agctgctata 3781 tatgggcttg tccaccgctg aagggtgagg actacatctt atattgccat ccagaaattc 3841 agaaaacgcc aaagtctgat aaactacggg agtggtactt ggcaatgttg agaaaagctg 3901 caaaggaagg gattgtagcg gaaaccacaa atctatatga ccattttttc ttgcaaactg 3961 gtgaatgtag agctaaggtt acggcagcta ggctcccgta tttcgatggt gactattggc 4021 caggtgcagc agaggatatc atacaccaaa tgggtcagga agatgatggt agaaaaggaa 4081 ataagaaagg gatactcaag aaacccatta caaaaagggc tctaaaagct tgtggccagt 4141 ctgatctgtc tgggaatatg tccaaagatc tgctgctaat gcaaaaactt ggtgagacca 4201 ttcaccccat gaaggaggac tttatcatgg ttcacttgca gcattgttgc aaccattgct 4261 gtgcactgat ggtaactggc aatcgttggg tctgcagcca atgcaaagat ttccagttat 4321 gtgatgggtg ctatgaggct gaacagaggc gagaggacag agaaaggcat cctgttaatc 4381 aaaaggataa acatacactg tatcctgttg agatcactgg tattcctgaa gacaccaagg 4441 atagagatga gatactagaa agtgaatttt tcgacacaag gcaagccttc ctgagtcttt 4501 gtcaagggaa ccactatcag tacgatacac tgaggcgggc aaaacactct tccatgatgg 4561 tgctttacca tctccacaat ccaactgctc ctgcctttgt ctcaacgtgt aacgcatgcc 4621 acctcgatat cgaaactggc caaggctggc gctgcgaagt ttgccctgac tacgatgtgt 4681 gcaacacttg ttaccgtaaa gagggatgta ttaatcatcc tcacaagctg acgaaccatc 4741 catcgctagc tgaccaaaat gctcagaaca aagaagctag gcagttgcga gtcttgcagc 4801 tcaggaaaat gctcgatctt cttgtgcatg cgacgctatg ccgccgtgcg acgaattgtc 4861 agtatcctaa ctgccgcaaa gtgaaggcgc tgttccggca tggtctaggt tgccagagac 4921 gtgcttcggg aggctgtgtt ctgtgcagga agatgtggta tctcttgcaa atccacgcac 4981 gggcctgcaa ggaatcgaac tgtgctgtac ctcgatgcgg agacctaaag gaacatctga 5041 gaagattaca acagcaagca gattcacggc gcagagcagc tgtcatggag atgatgaggc 5101 agagaactgc agaagtcgct gggacctcgg ctgattaatt tttgtatata cttaatttca 5161 tttaggaaca gaagtggaaa tagatagaag aaggtggcgt ctctgagctc tacttgaaga 5221 agtgaataac accagctagt gaaga //