Dbfetch
LOCUS XM_012206989 2826 bp mRNA linear INV 02-APR-2015 DEFINITION PREDICTED: Atta cephalotes ubiquitin carboxyl-terminal hydrolase 45 (LOC105625666), mRNA. ACCESSION XM_012206989 VERSION XM_012206989.1 DBLINK BioProject: PRJNA279976 KEYWORDS RefSeq; corrected model. SOURCE Atta cephalotes ORGANISM Atta cephalotes Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Atta. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_012130067.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Atta cephalotes Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-85 ADTU01003666.1 4479-4563 c 86-132 ADTU01003666.1 4047-4093 c 133-133 "N" 1-1 134-222 ADTU01003666.1 3958-4046 c 223-410 ADTU01003666.1 3686-3873 c 411-567 ADTU01003666.1 1361-1517 c 568-735 ADTU01003666.1 1012-1179 c 736-957 ADTU01003665.1 9534-9755 c 958-1220 ADTU01003665.1 6610-6872 c 1221-1453 ADTU01003665.1 6288-6520 c 1454-1979 ADTU01003665.1 5586-6111 c 1980-2277 ADTU01003665.1 4848-5145 c 2278-2547 ADTU01003665.1 4418-4687 c 2548-2723 ADTU01003665.1 3876-4051 c 2724-2826 ADTU01003665.1 3406-3508 c FEATURES Location/Qualifiers source 1..2826 /organism="Atta cephalotes" /mol_type="mRNA" /db_xref="taxon:12957" /chromosome="Unknown" /sex="male" gene 1..2826 /gene="LOC105625666" /note="The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 72 long SRA reads, 3 Proteins" /db_xref="GeneID:105625666" CDS 1..2796 /gene="LOC105625666" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 45" /protein_id="XP_012062379.1" /db_xref="GeneID:105625666" /translation="MSKKRNRQPDANPDVSEASTESCEETSSAGAKCPHIAKAINLNK XKKNLKKTGILSKCSMCKKLEMDLKTAEEICDISKPLWICLQCGEQGCSKEEKQHAFE HYRKPHSDCHCMVTDSYHWSVWCYQCEIEVHPNSRKKLLETVEFIKKYVNIPQISQLK MPAIQCQKEMIIDVQEKEHKILNNLPKVGGLANLGNTCFFNAVLQCLAQTPYLVKVLD DLRIPGQKFVLPGGKHKPVDAEEEVELPPIEGTLERWGSFTSILCETLSKMQNTNGHQ TYTPLNLLCKLRKKTTQCVDGGQHDSHEFLRHLLEIVRNEDLRRYQSIILKEVGLSGK TKPDCVEKGLKSRVKFYGNQASTRLLGPEVVFRGMLVSTLECLDCHHSSQRTEPFLDL SLPVTADKPQSPLLKRKNSEFEDAFDMMNIQQHDCQTEIWKSEDTPWKQLKKEKKAAR KNRKNKRHENYNNSNALMDLNNPAEENNDNVLKSEESDADVEDNIEMDNSHPEIGESG YSSEKASAVTSPVSPADHHHHHHHHHHHHHHHHHHYHHPNNDFNSAISPEDNNLDNSN LDAAQVKHPVNINALISPSPTDVSMTDLTQIRMPFEKTDRTSSENEVLATALISSIIV NSDVTSPEIPTASLSSSAASKGSPTSPVNNEKIAERLDGVETWMATTLSRYGRRKYNN GTSNGDNPEEQDVYNELGDIVMGMSRLGIAGHQSLGRYTTKEGECSVESCLNQFTALE LMTGSNKVVCEACTAREKKTQEGSSKMVCTSSTKQYLISQVPPILILHLKRFQTQRIG FRKVFKHVSFPILLDLAPVCTDRKKSRLYALYGVVEHSGTVHGGHYVAYVKTRLPLSS DDPRWKFLPKDKDSKANNESSSSDSDEEEALAKGVSIVEPPPGKWYYVSDSRVSEVDE NTVLQSQAYLLFYERIL" ORIGIN 1 atgagtaaaa agcggaatag gcaaccggac gcgaatcccg acgtcagtga ggcctccaca 61 gagtcttgtg aggagacaag ctcagcaggt gcaaaatgtc cgcacatagc aaaggccatt 121 aacctgaaca aanataaaaa aaatctaaaa aagactggta tattaagcaa atgttccatg 181 tgcaaaaaac tagagatgga tctcaagaca gcagaggaga tttgtgatat ttcaaagccc 241 ttgtggattt gcttgcaatg tggagaacaa ggctgtagta aagaggaaaa gcagcatgcc 301 tttgagcatt ataggaagcc tcatagcgac tgccattgca tggtgacgga ttcttaccat 361 tggagtgttt ggtgctatca gtgtgaaatt gaagttcatc ctaacagtag gaaaaaactc 421 ctagaaactg tagagtttat caaaaaatat gttaatatac cacaaatatc tcaattgaaa 481 atgccagcaa ttcagtgcca aaaagagatg ataatcgacg tacaggagaa agaacataaa 541 atattgaata atcttcctaa agtcggaggc ttagccaatc taggaaacac gtgttttttc 601 aatgctgtac ttcaatgtct agcgcaaaca ccttacttag tgaaagtgct ggatgactta 661 cgtatacctg ggcagaaatt tgtcttacca ggtggaaagc acaaacctgt cgatgctgag 721 gaggaagtag agttgccacc aatcgaggga accttagagc gatggggcag tttcacatca 781 attctctgtg aaactctgtc gaaaatgcaa aatacgaatg gccatcaaac ttatactcct 841 ttgaatcttc tttgtaagct caggaaaaag actacgcaat gcgtggatgg agggcagcat 901 gattcacatg agtttcttcg acacttattg gaaatagttc gaaatgaaga tcttcgaaga 961 taccagagca taattctaaa ggaggtcggc ctgagtggaa aaacaaagcc ggattgcgtg 1021 gaaaagggcc tgaaatctcg cgtgaagttc tatggcaatc aggccagtac gaggttgtta 1081 ggaccagaag tagtatttcg cggcatgtta gtatctactc tagagtgcct ggattgtcat 1141 cattcgtcgc aacgcaccga gccatttcta gacttgagtc tacctgtcac tgcggataag 1201 ccacaatctc ctctcttaaa aaggaagaat agcgaatttg aggatgcttt tgacatgatg 1261 aacattcaac aacatgattg tcagacggag atttggaaat cggaggatac accatggaag 1321 caattgaaaa aagagaaaaa ggcagcgagg aagaaccgaa aaaataaaag gcacgagaat 1381 tataacaatt ctaacgcgtt aatggatcta aataatcccg cggaagaaaa caatgataat 1441 gttttgaaat cagaagagag tgacgccgat gtagaagaca atattgagat ggacaattct 1501 catccggaga ttggagagtc tggttatagc tctgagaaag catccgctgt caccagtcct 1561 gtatctcctg ctgaccatca tcaccatcat catcatcatc atcatcatca tcatcatcat 1621 catcatcatt atcatcatcc aaacaatgat tttaatagcg caatcagccc tgaggacaat 1681 aatctggata acagtaattt agacgcagca caagttaaac atccagtgaa cattaatgca 1741 ttaattagtc ctagtccaac cgatgtgtcg atgacggact tgactcaaat caggatgccg 1801 ttcgagaaga ctgacaggac cagctccgag aatgaagtgt tagctacagc attgatcagc 1861 tccataatcg tcaactctga cgtcacaagc cccgagatac ccaccgcaag cttaagtagc 1921 tctgctgctt ctaaggggag tcccactagt cctgtcaata atgaaaaaat tgcggaaaga 1981 ttggatggag ttgagacatg gatggctact actttatcaa gatatggtag aagaaaatat 2041 aataacggaa cttcgaatgg agataatccc gaagagcaag atgtatataa cgagcttggt 2101 gacatagtga tgggaatgtc taggctggga attgccgggc atcaatcact tggcaggtac 2161 acaaccaagg agggtgaatg ttccgtggaa tcatgcttga atcaattcac tgcactagaa 2221 ctaatgacgg gaagtaacaa agtcgtatgc gaggcatgca cagctcgtga gaagaagact 2281 caggaaggtt cgtcaaagat ggtatgcact tcgagtacaa agcaatacct catctctcaa 2341 gtacccccga tattaatact gcatttgaaa agatttcaaa cgcagagaat tggttttcga 2401 aaggttttca aacatgtgtc attcccaata ttattagact tagcaccggt ttgcacagat 2461 cgcaaaaaat ctcgacttta tgcactttat ggggtcgtcg agcacagtgg aactgttcat 2521 ggtggtcact atgttgctta tgtcaagacg agattgccgc tatcatcaga tgatcctcga 2581 tggaagtttc ttccaaagga taaagattct aaagcgaata atgaatcgag tagttcagat 2641 tcagatgagg aagaagcatt agcgaaagga gtatccattg tggaacctcc tcctgggaaa 2701 tggtattatg tatcagattc tcgggtatca gaagtagatg aaaatacagt gttacaaagt 2761 caagcgtatc ttttattcta cgagaggatt ctctgattca ataaaatgaa gtagaatgtg 2821 aatgaa //